CRAN Package Check Results for Package EHRtemporalVariability

Last updated on 2019-08-21 22:48:38 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0.1 6.90 79.26 86.16 OK
r-devel-linux-x86_64-debian-gcc 1.0.1 OK
r-devel-linux-x86_64-fedora-clang 1.0.1 105.02 NOTE
r-devel-linux-x86_64-fedora-gcc 1.0.1 100.71 NOTE
r-devel-windows-ix86+x86_64 1.0.1 19.00 237.00 256.00 NOTE
r-patched-linux-x86_64 1.0.1 5.83 77.06 82.89 OK
r-patched-solaris-x86 1.0.1 166.50 WARN
r-release-linux-x86_64 1.0.1 6.03 76.93 82.96 OK
r-release-windows-ix86+x86_64 1.0.1 10.00 167.00 177.00 NOTE
r-release-osx-x86_64 1.0.1 WARN
r-oldrel-windows-ix86+x86_64 1.0.1 16.00 118.00 134.00 WARN
r-oldrel-osx-x86_64 1.0.1 WARN

Check Details

Version: 1.0.1
Check: installed package size
Result: NOTE
     installed size is 5.5Mb
     sub-directories of 1Mb or more:
     extdata 5.1Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-ix86+x86_64, r-patched-solaris-x86, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 1.0.1
Check: dependencies in R code
Result: NOTE
    Namespace in Imports field not imported from: ‘shiny’
     All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-x86, r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 1.0.1
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘EHRtemporalVariability.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Loading required package: dplyr
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Joining, by = "diagcode1"
    Warning: Column `diagcode1` joining factor and character vector, coercing into character vector
    # Missing values: 0 cases ( 0%)
    # External causes codes: 0 cases ( 0%)
    # V codes not mapped: 74330 cases ( 22.82%)
    # Total ICD9-CM codes mapped: 146262 cases ( 44.9%)
    # Unique ICD9-CM codes mapped: 3020
    # Total PheWAS codes: 757
    # ICD9 codes not mapped: 105180 cases ( 32.29%)
    Quitting from lines 318-323 (EHRtemporalVariability.Rmd)
    Error: processing vignette 'EHRtemporalVariability.Rmd' failed with diagnostics:
    there is no package called 'webshot'
    --- failed re-building ‘EHRtemporalVariability.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘EHRtemporalVariability.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-patched-solaris-x86

Version: 1.0.1
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘BiocStyle’
Flavors: r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 1.0.1
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘EHRtemporalVariability.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Loading required package: dplyr
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Joining, by = "diagcode1"
    Warning: Column `diagcode1` joining factor and character vector, coercing into character vector
    # Missing values: 0 cases ( 0%)
    # External causes codes: 0 cases ( 0%)
    # V codes not mapped: 74330 cases ( 22.82%)
    # Total ICD9-CM codes mapped: 146262 cases ( 44.9%)
    # Unique ICD9-CM codes mapped: 3020
    # Total PheWAS codes: 757
    # ICD9 codes not mapped: 105180 cases ( 32.29%)
    Quitting from lines 318-323 (EHRtemporalVariability.Rmd)
    Error: processing vignette 'EHRtemporalVariability.Rmd' failed with diagnostics:
    cannot open the connection
    --- failed re-building ‘EHRtemporalVariability.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘EHRtemporalVariability.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-release-osx-x86_64

Version: 1.0.1
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Loading required package: dplyr
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Quitting from lines 93-95 (EHRtemporalVariability.Rmd)
    Error: processing vignette 'EHRtemporalVariability.Rmd' failed with diagnostics:
    cannot open the connection
    Execution halted
Flavor: r-oldrel-windows-ix86+x86_64

Version: 1.0.1
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Loading required package: dplyr
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Joining, by = "diagcode1"
    Warning: Column `diagcode1` joining factor and character vector, coercing into character vector
    # Missing values: 0 cases ( 0%)
    # External causes codes: 0 cases ( 0%)
    # V codes not mapped: 74330 cases ( 22.82%)
    # Total ICD9-CM codes mapped: 146262 cases ( 44.9%)
    # Unique ICD9-CM codes mapped: 3020
    # Total PheWAS codes: 757
    # ICD9 codes not mapped: 105180 cases ( 32.29%)
    Quitting from lines 318-323 (EHRtemporalVariability.Rmd)
    Error: processing vignette 'EHRtemporalVariability.Rmd' failed with diagnostics:
    cannot open the connection
    Execution halted
Flavor: r-oldrel-osx-x86_64