CRAN Package Check Results for Package biclust

Last updated on 2017-11-21 22:47:44 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.2.0 2.26 49.99 52.25 NOTE
r-devel-linux-x86_64-debian-gcc 1.2.0 2.79 109.48 112.27 NOTE
r-devel-linux-x86_64-fedora-clang 1.2.0 90.41 NOTE
r-devel-linux-x86_64-fedora-gcc 1.2.0 134.38 NOTE
r-devel-windows-ix86+x86_64 1.2.0 16.00 124.00 140.00 NOTE
r-patched-linux-x86_64 1.2.0 2.54 54.26 56.80 NOTE
r-patched-solaris-x86 1.2.0 141.40 NOTE
r-release-linux-x86_64 1.2.0 2.36 56.93 59.29 NOTE
r-release-windows-ix86+x86_64 1.2.0 10.00 133.00 143.00 NOTE
r-release-osx-x86_64 1.2.0 NOTE
r-oldrel-windows-ix86+x86_64 1.2.0 9.00 150.00 159.00 NOTE
r-oldrel-osx-x86_64 1.2.0 NOTE

Additional issues

valgrind

Check Details

Version: 1.2.0
Check: R code for possible problems
Result: NOTE
    biclustbarchart: no visible global function definition for ‘plot’
    biclustmember: no visible global function definition for ‘plot.new’
    biclustmember: no visible global function definition for ‘rect’
    biclustmember: no visible global function definition for ‘axis’
    biclustmember: no visible global function definition for ‘title’
    bigquestmetmotif: no visible global function definition for ‘qnorm’
    bimaxbiclust: no visible global function definition for ‘flush.console’
    bubbleplot: no visible global function definition for ‘rgb’
    bubbleplot: no visible global function definition for ‘par’
    bubbleplot: no visible global function definition for ‘dist’
    bubbleplot: no visible global function definition for ‘cmdscale’
    bubbleplot: no visible global function definition for ‘plot’
    bubbleplot: no visible global function definition for ‘text’
    ccbiclust: no visible global function definition for ‘runif’
    clustmember: no visible global function definition for ‘plot.new’
    clustmember: no visible global function definition for ‘rect’
    clustmember: no visible global function definition for ‘axis’
    clustmember: no visible global function definition for ‘title’
    computeObservedFstat: no visible global function definition for ‘anova’
    computeObservedFstat: no visible global function definition for ‘aov’
    computeObservedFstat: no visible global function definition for ‘pf’
    corappr: no visible global function definition for ‘cor’
    diagnoseColRow: no visible global function definition for ‘anova’
    diagnoseColRow: no visible global function definition for ‘aov’
    diagnosticPlot: no visible global function definition for ‘par’
    diagnosticPlot: no visible global function definition for ‘density’
    diagnosticPlot: no visible global function definition for ‘hist’
    diagnosticPlot: no visible global function definition for ‘lines’
    discretize: no visible global function definition for ‘quantile’
    drawHeatmap: no visible global function definition for ‘rgb’
    drawHeatmap: no visible global function definition for ‘par’
    drawHeatmap: no visible global function definition for ‘image’
    drawHeatmap: no visible global function definition for ‘axis’
    drawHeatmap2: no visible global function definition for ‘rgb’
    drawHeatmap2: no visible global function definition for ‘par’
    drawHeatmap2: no visible global function definition for ‘image’
    hcl: no visible global function definition for ‘hclust’
    hcl: no visible global function definition for ‘as.dist’
    hcl: no visible global function definition for ‘plot’
    hcl: no visible global function definition for ‘cutree’
    heatmapBC: no visible global function definition for ‘image’
    heatmapBC: no visible global function definition for ‘rect’
    iterativeKmeans: no visible global function definition for ‘kmeans’
    kmeansClassStart: no visible global function definition for ‘kmeans’
    kmeansStart: no visible global function definition for ‘kmeans’
    parallelCoordinates: no visible global function definition for ‘par’
    parallelCoordinates: no visible global function definition for
     ‘matplot’
    parallelCoordinates: no visible global function definition for ‘gray’
    parallelCoordinates: no visible global function definition for ‘axis’
    parallelCoordinates: no visible global function definition for ‘title’
    plaid: no visible global function definition for ‘terms’
    plaid.grid: no visible global function definition for ‘as.formula’
    plotclust: no visible global function definition for ‘par’
    plotclust: no visible binding for global variable ‘median’
    plotclust: no visible global function definition for ‘barplot’
    plotclust: no visible global function definition for ‘title’
    prequest: no visible binding for global variable ‘sd’
    prequest: no visible binding for global variable ‘median’
    printrect: no visible global function definition for ‘rect’
    variance: no visible global function definition for ‘dist’
    Undefined global functions or variables:
     anova aov as.dist as.formula axis barplot cmdscale cor cutree density
     dist flush.console gray hclust hist image kmeans lines matplot median
     par pf plot plot.new qnorm quantile rect rgb runif sd terms text
     title
    Consider adding
     importFrom("grDevices", "gray", "rgb")
     importFrom("graphics", "axis", "barplot", "hist", "image", "lines",
     "matplot", "par", "plot", "plot.new", "rect", "text",
     "title")
     importFrom("stats", "anova", "aov", "as.dist", "as.formula",
     "cmdscale", "cor", "cutree", "density", "dist", "hclust",
     "kmeans", "median", "pf", "qnorm", "quantile", "runif",
     "sd", "terms")
     importFrom("utils", "flush.console")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 1.2.0
Check: compiled code
Result: NOTE
    File ‘biclust/libs/biclust.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64