CRAN Package Check Results for Package bioRad

Last updated on 2019-12-10 22:49:27 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.4.0 19.15 181.88 201.03 OK
r-devel-linux-x86_64-debian-gcc 0.4.0 15.23 135.72 150.95 OK
r-devel-linux-x86_64-fedora-clang 0.4.0 234.96 NOTE
r-devel-linux-x86_64-fedora-gcc 0.4.0 235.76 OK
r-devel-windows-ix86+x86_64 0.4.0 39.00 278.00 317.00 NOTE
r-devel-windows-ix86+x86_64-gcc8 0.4.0 43.00 209.00 252.00 NOTE
r-patched-linux-x86_64 0.4.0 16.57 157.91 174.48 OK
r-patched-solaris-x86 0.4.0 286.30 ERROR
r-release-linux-x86_64 0.4.0 14.91 162.50 177.41 OK
r-release-windows-ix86+x86_64 0.4.0 37.00 198.00 235.00 NOTE
r-release-osx-x86_64 0.4.0 NOTE
r-oldrel-windows-ix86+x86_64 0.4.0 24.00 194.00 218.00 NOTE
r-oldrel-osx-x86_64 0.4.0 NOTE

Check Details

Version: 0.4.0
Check: installed package size
Result: NOTE
     installed size is 6.2Mb
     sub-directories of 1Mb or more:
     data 1.6Mb
     extdata 2.6Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-ix86+x86_64, r-devel-windows-ix86+x86_64-gcc8, r-patched-solaris-x86, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 0.4.0
Check: examples
Result: ERROR
    Running examples in ‘bioRad-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: example_scan
    > ### Title: Example object of class 'scan'
    > ### Aliases: example_scan
    > ### Keywords: datasets
    >
    > ### ** Examples
    >
    > # get summary of example scan:
    > summary(example_scan)
     Polar scan (class scan)
    
     parameters: VRADH DBZH ZDR RHOHV PHIDP
    elevation angle: 0.5 deg
     dims: 480 bins x 360 rays
    >
    > # example_scan was created with:
    > pvolfile <- system.file("extdata", "volume.h5", package = "bioRad")
    > pvol <- read_pvolfile(pvolfile)
    Error in H5Fopen(file, "H5F_ACC_RDONLY", native = native) :
     HDF5. File accessibilty. Unable to open file.
    Calls: read_pvolfile ... is.odimfile -> h5ls -> h5checktypeOrOpenLoc -> H5Fopen
    Execution halted
Flavor: r-patched-solaris-x86

Version: 0.4.0
Check: tests
Result: ERROR
     Running ‘testthat.R’ [13s/17s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(bioRad)
     Welcome to bioRad version 0.4.0
     Warning: no running Docker daemon found Warning: bioRad functionality
     requiring Docker has been disabled
    
     To enable Docker functionality, start Docker and run 'check_docker()'
     in R
     >
     > test_check("bioRad")
     ── 1. Error: Read a vertical profile (@test-read_vpfiles.R#5) ─────────────────
     HDF5. File accessibilty. Unable to open file.
     Backtrace:
     1. testthat::expect_s3_class(readvp(vpfile), "vp")
     4. bioRad::readvp(vpfile)
     5. bioRad::read_vpfiles(...)
     6. bioRad:::read_vp(files)
     7. bioRad::is.vpfile(file)
     8. bioRad::get_odim_object_type(file)
     9. bioRad:::is.odimfile(file)
     10. rhdf5::h5ls(file, recursive = FALSE)
     11. rhdf5:::h5checktypeOrOpenLoc(file, readonly = TRUE, native = native)
     12. rhdf5::H5Fopen(file, "H5F_ACC_RDONLY", native = native)
    
     ── 2. Error: Read multiple vertical profiles (@test-read_vpfiles.R#13) ────────
     HDF5. File accessibilty. Unable to open file.
     Backtrace:
     1. testthat::expect_is(readvp.list(c(vpfile, vpfile)), "list")
     4. bioRad::readvp.list(c(vpfile, vpfile))
     5. bioRad::read_vpfiles(...)
     6. base::lapply(files, read_vp)
     7. bioRad:::FUN(X[[i]], ...)
     8. bioRad::is.vpfile(file)
     9. bioRad::get_odim_object_type(file)
     10. bioRad:::is.odimfile(file)
     11. rhdf5::h5ls(file, recursive = FALSE)
     12. rhdf5:::h5checktypeOrOpenLoc(file, readonly = TRUE, native = native)
     13. rhdf5::H5Fopen(file, "H5F_ACC_RDONLY", native = native)
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     [ OK: 19 | SKIPPED: 0 | WARNINGS: 6 | FAILED: 2 ]
     1. Error: Read a vertical profile (@test-read_vpfiles.R#5)
     2. Error: Read multiple vertical profiles (@test-read_vpfiles.R#13)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-patched-solaris-x86