CRAN Package Check Results for Package geoR

Last updated on 2018-07-17 22:50:38 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.7-5.2 22.54 104.96 127.50 ERROR
r-devel-linux-x86_64-debian-gcc 1.7-5.2 18.39 81.35 99.74 ERROR
r-devel-linux-x86_64-fedora-clang 1.7-5.2 170.00 NOTE
r-devel-linux-x86_64-fedora-gcc 1.7-5.2 154.22 NOTE
r-devel-windows-ix86+x86_64 1.7-5.2 37.00 157.00 194.00 NOTE
r-patched-linux-x86_64 1.7-5.2 20.56 102.51 123.07 ERROR
r-patched-solaris-x86 1.7-5.2 222.20 NOTE
r-release-linux-x86_64 1.7-5.2 22.24 102.02 124.26 ERROR
r-release-windows-ix86+x86_64 1.7-5.2 36.00 194.00 230.00 NOTE
r-release-osx-x86_64 1.7-5.2 NOTE
r-oldrel-windows-ix86+x86_64 1.7-5.2 12.00 155.00 167.00 NOTE
r-oldrel-osx-x86_64 1.7-5.2 NOTE

Additional issues

valgrind

Check Details

Version: 1.7-5.2
Check: R code for possible problems
Result: NOTE
    .ldots.set: no visible global function definition for ‘getS3method’
    grf: no visible global function definition for ‘chull’
    image.grf: no visible global function definition for ‘heat.colors’
    image.krige.bayes: no visible global function definition for
     ‘heat.colors’
    legend.krige: no visible global function definition for ‘heat.colors’
    points.geodata: no visible global function definition for
     ‘terrain.colors’
    points.geodata: no visible global function definition for ‘gray’
    read.geodata: no visible global function definition for ‘read.table’
    Undefined global functions or variables:
     chull getS3method gray heat.colors read.table terrain.colors
    Consider adding
     importFrom("grDevices", "chull", "gray", "heat.colors",
     "terrain.colors")
     importFrom("utils", "getS3method", "read.table")
    to your NAMESPACE file.
    
    Found the following assignments to the global environment:
    File ‘geoR/R/auxiliar.R’:
     assign(".objfuncQQ", objfunc, pos = 1)
     assign(".bounds.list", .bounds.list, pos = 1)
     assign("madtonormalQQ", madtonormalQQ, pos = 1)
    File ‘geoR/R/likGRF.R’:
     assign(".likGRF.dists.vec", lapply(split(as.data.frame(coords),
     realisations), vecdist), pos = 1)
     assign(".likGRF.dists.vec", lapply(split(as.data.frame(coords),
     realisations), vecdist), pos = 1)
     assign(".likGRF.dists.vec", lapply(split(as.data.frame(coords.c),
     temp.list$realisations), vecdist), pos = 1)
     assign(".temp.lower.lambda", -2, pos = 1)
     assign(".temp.upper.lambda", 2, pos = 1)
    File ‘geoR/R/profiles.R’:
     assign(".temp.list", list(n = n, z = data, beta.size = dim(trend)[2],
     kappa = obj.likfit$kappa, xmat = trend, method.lik = obj.likfit$method.lik,
     dists.lowertri = dists.vec, cov.model = obj.likfit$cov.model,
     fix.lambda = obj.likfit$transform.info$fix.lambda, lambda = obj.likfit$lambda,
     lower.phi = lower.phi, upper.phi = upper.phi, lower.sigmasq = lower.sigmasq,
     phi.est = phi, tausq.rel.est = tausq.rel, tausq.est = tausq,
     sigmasq.est = sigmasq), pos = 1)
     assign(".temp.temp.list", get(".temp.list", pos = 1), pos = 1)
     assign(".temp.list", .temp.temp.list, pos = 1)
     assign(".temp.lambda", lambda, pos = 1)
     assign(".temp.lambda", lambda, pos = 1)
    File ‘geoR/R/simul.R’:
     assign("setRF", geoR2RF(cov.model = cov.model, cov.pars = cov.pars,
     nugget = nugget, kappa = kappa, aniso.pars = aniso.pars),
     pos = 1)
    File ‘geoR/R/variofit.R’:
     assign(".temp.theta", NULL, pos = 1)
     assign(".temp.theta", theta, pos = 1)
     assign(".IND.geoR.variog.model.env", TRUE, pos = 1)
    File ‘geoR/R/variogram.R’:
     assign(".variog4.nomessage", TRUE, pos = 1)
    
    Found the following calls to attach():
    File ‘geoR/R/auxiliar.R’:
     attach(geodata, pos = 2, warn.conflicts = FALSE)
     attach(geodata$covariate, pos = 3, warn.conflicts = FALSE)
    File ‘geoR/R/geobayes.R’:
     attach(x, pos = 2, warn.conflicts = FALSE)
     attach(x, pos = 2, warn.conflicts = FALSE)
     attach(x, pos = 2, warn.conflicts = FALSE)
    File ‘geoR/R/geodata.R’:
     attach(x, pos = 2, warn.conflicts = FALSE)
     attach(x, pos = 2, warn.conflicts = FALSE)
    File ‘geoR/R/kriging.R’:
     attach(x, pos = 2, warn.conflicts = FALSE)
     attach(x, pos = 2, warn.conflicts = FALSE)
     attach(x, pos = 2, warn.conflicts = FALSE)
    See section ‘Good practice’ in ‘?attach’.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.7-5.2
Check: compiled code
Result: NOTE
    File ‘geoR/libs/geoR.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.7-5.2
Check: examples
Result: ERROR
    Running examples in ‘geoR-Ex.R’ failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: lines.variogram.envelope
    > ### Title: Adds Envelopes Lines to a Variogram Plot
    > ### Aliases: lines.variogram.envelope
    > ### Keywords: spatial aplot
    >
    > ### ** Examples
    >
    > s100.vario <- variog(s100, max.dist = 1)
    variog: computing omnidirectional variogram
    > s100.ml <- likfit(s100, ini=c(.5, .5))
    ---------------------------------------------------------------
    likfit: likelihood maximisation using the function optim.
    likfit: Use control() to pass additional
     arguments for the maximisation function.
     For further details see documentation for optim.
    likfit: It is highly advisable to run this function several
     times with different initial values for the parameters.
    likfit: WARNING: This step can be time demanding!
    ---------------------------------------------------------------
    likfit: end of numerical maximisation.
    > s100.mod.env <- variog.model.env(s100, obj.variog = s100.vario,
    + model = s100.ml)
    Error in if (class(model.pars) == "eyefit") { :
     the condition has length > 1
    Calls: variog.model.env
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.7-5.2
Check: R code for possible problems
Result: NOTE
    .ldots.set: no visible global function definition for ‘getS3method’
    grf: no visible global function definition for ‘chull’
    image.grf: no visible global function definition for ‘heat.colors’
    image.krige.bayes: no visible global function definition for
     ‘heat.colors’
    legend.krige: no visible global function definition for ‘heat.colors’
    points.geodata: no visible global function definition for
     ‘terrain.colors’
    points.geodata: no visible global function definition for ‘gray’
    read.geodata: no visible global function definition for ‘read.table’
    Undefined global functions or variables:
     chull getS3method gray heat.colors read.table terrain.colors
    Consider adding
     importFrom("grDevices", "chull", "gray", "heat.colors",
     "terrain.colors")
     importFrom("utils", "getS3method", "read.table")
    to your NAMESPACE file.
    
    Found the following assignments to the global environment:
    File ‘geoR/R/auxiliar.R’:
     assign(".objfuncQQ", objfunc, pos = 1)
     assign(".bounds.list", .bounds.list, pos = 1)
     assign("madtonormalQQ", madtonormalQQ, pos = 1)
    File ‘geoR/R/likGRF.R’:
     assign(".likGRF.dists.vec", lapply(split(as.data.frame(coords),
     realisations), vecdist), pos = 1)
     assign(".likGRF.dists.vec", lapply(split(as.data.frame(coords),
     realisations), vecdist), pos = 1)
     assign(".likGRF.dists.vec", lapply(split(as.data.frame(coords.c),
     temp.list$realisations), vecdist), pos = 1)
     assign(".temp.lower.lambda", -2, pos = 1)
     assign(".temp.upper.lambda", 2, pos = 1)
    File ‘geoR/R/profiles.R’:
     assign(".temp.list", list(n = n, z = data, beta.size = dim(trend)[2],
     kappa = obj.likfit$kappa, xmat = trend, method.lik = obj.likfit$method.lik,
     dists.lowertri = dists.vec, cov.model = obj.likfit$cov.model,
     fix.lambda = obj.likfit$transform.info$fix.lambda, lambda = obj.likfit$lambda,
     lower.phi = lower.phi, upper.phi = upper.phi, lower.sigmasq = lower.sigmasq,
     phi.est = phi, tausq.rel.est = tausq.rel, tausq.est = tausq,
     sigmasq.est = sigmasq), pos = 1)
     assign(".temp.temp.list", get(".temp.list", pos = 1), pos = 1)
     assign(".temp.list", .temp.temp.list, pos = 1)
     assign(".temp.lambda", lambda, pos = 1)
     assign(".temp.lambda", lambda, pos = 1)
    File ‘geoR/R/simul.R’:
     assign("setRF", geoR2RF(cov.model = cov.model, cov.pars = cov.pars,
     nugget = nugget, kappa = kappa, aniso.pars = aniso.pars),
     pos = 1)
    File ‘geoR/R/variofit.R’:
     assign(".temp.theta", NULL, pos = 1)
     assign(".temp.theta", theta, pos = 1)
     assign(".IND.geoR.variog.model.env", TRUE, pos = 1)
    File ‘geoR/R/variogram.R’:
     assign(".variog4.nomessage", TRUE, pos = 1)
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 1.7-5.2
Check: R code for possible problems
Result: NOTE
    .ldots.set: no visible global function definition for ‘getS3method’
    grf: no visible global function definition for ‘chull’
    image.grf: no visible global function definition for ‘heat.colors’
    image.krige.bayes: no visible global function definition for
     ‘heat.colors’
    legend.krige: no visible global function definition for ‘heat.colors’
    points.geodata: no visible global function definition for
     ‘terrain.colors’
    points.geodata: no visible global function definition for ‘gray’
    read.geodata: no visible global function definition for ‘read.table’
    Undefined global functions or variables:
     chull getS3method gray heat.colors read.table terrain.colors
    Consider adding
     importFrom("grDevices", "chull", "gray", "heat.colors",
     "terrain.colors")
     importFrom("utils", "getS3method", "read.table")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-solaris-x86, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64