CRAN Package Check Results for Package largeVis

Last updated on 2018-04-21 22:48:22 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.2.1.1 198.70 56.82 255.52 OK --no-examples --no-tests --no-vignettes
r-devel-linux-x86_64-debian-gcc 0.2.1.1 172.32 45.40 217.72 OK --no-examples --no-tests --no-vignettes
r-devel-linux-x86_64-fedora-clang 0.2.1.1 496.57 NOTE
r-devel-linux-x86_64-fedora-gcc 0.2.1.1 443.35 NOTE
r-devel-windows-ix86+x86_64 0.2.1.1 564.00 200.00 764.00 NOTE
r-devel-osx-x86_64 0.2.1.1 NOTE
r-patched-linux-x86_64 0.2.1.1 213.19 55.29 268.48 OK --no-examples --no-tests --no-vignettes
r-patched-solaris-x86 0.2.1.1 379.70 ERROR
r-release-linux-x86_64 0.2.1.1 203.84 56.94 260.78 OK --no-examples --no-tests --no-vignettes
r-release-windows-ix86+x86_64 0.2.1.1 431.00 187.00 618.00 NOTE
r-release-osx-x86_64 0.2.1.1 NOTE
r-oldrel-windows-ix86+x86_64 0.2.1.1 564.00 182.00 746.00 NOTE

Additional issues

clang-ASAN

Check Details

Version: 0.2.1.1
Check: installed package size
Result: NOTE
     installed size is 19.0Mb
     sub-directories of 1Mb or more:
     libs 14.0Mb
     testdata 1.8Mb
     vignettedata 2.0Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-devel-osx-x86_64, r-patched-solaris-x86, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.2.1.1
Check: examples
Result: ERROR
    Running examples in ‘largeVis-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: as.dendrogram.hdbscan
    > ### Title: as.dendrogram.hdbscan
    > ### Aliases: as.dendrogram.hdbscan
    >
    > ### ** Examples
    >
    > data(iris)
    > vis <- largeVis(t(iris[,1:4]), K = 20, sgd_batches = 1, threads = 1)
    Error: C stack usage 195007380 is too close to the limit
    
    error: Mat::col(): index out of bounds
    
    error: Mat::col(): index out of bounds
    terminate called after throwing an instance of 'std::logic_error'
     what(): Mat::col(): index out of bounds
Flavor: r-patched-solaris-x86

Version: 0.2.1.1
Check: tests
Result: ERROR
     Running ‘testthat.R’ [7s/25s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(largeVis)
     Loading required package: Matrix
     largeVis was compiled with 32-bit types. This will limit the size of the datasets it can process. Consider recompiling with -DARMA_64BIT_WORD
     >
     > test_check("largeVis")
     Error: C stack usage 194941844 is too close to the limit
     Error: C stack usage 194941844 is too close to the limit
     Error: C stack usage 194941844 is too close to the limit
     Error: C stack usage 194941844 is too close to the limit
     Error: C stack usage 194941844 is too close to the limit
     Error: C stack usage 194941844 is too close to the limit
     ── 1. Failure: max threshold is sufficient to find all neighbors (@test_b_neighb
     `score` is not more than M * ncol(dat) - 1. Difference: -731
    
     Error: C stack usage 194941844 is too close to the limit
     ── 2. Error: exploration is not negative (@test_b_neighbors.R#64) ─────────────
     After neighbor search, no candidates for some nodes.
     1: randomProjectionTreeSearch(dat, K = M, n_trees = 1, tree_threshold = ncol(dat), max_iter = 0,
     threads = 2, verbose = FALSE) at testthat/test_b_neighbors.R:64
     2: randomProjectionTreeSearch.matrix(dat, K = M, n_trees = 1, tree_threshold = ncol(dat),
     max_iter = 0, threads = 2, verbose = FALSE)
     3: stop("After neighbor search, no candidates for some nodes.")
    
     Error: C stack usage 194941844 is too close to the limit
     ── 3. Failure: Can determine iris neighbors with iterations 1 thread (@test_b_ne
     sum(neighbors[, 1:40] > 50) not equal to 0.
     1/1 mismatches
     [1] 138 - 0 == 138
    
     ── 4. Failure: Can determine iris neighbors with iterations 1 thread (@test_b_ne
     `score` is not more than M * ncol(dat) - 1. Difference: -740
    
     Error: C stack usage 194941844 is too close to the limit
     ── 5. Failure: Can determine iris neighbors with iterations 2 threads (@test_b_n
     sum(neighbors[, 1:40] > 50) not equal to 0.
     1/1 mismatches
     [1] 115 - 0 == 115
    
     ── 6. Failure: Can determine iris neighbors with iterations 2 threads (@test_b_n
     `score` is not more than M * ncol(dat) - 1. Difference: -732
    
     Error: C stack usage 194941844 is too close to the limit
     ── 7. Failure: Can determine iris neighbors accurately, Euclidean (@test_b_neigh
     sum(neighbors != bests, na.rm = TRUE) is not less than 5. Difference: 738
    
     ── 8. Failure: With a bigger dataset, performance is as expected (@test_b_neighb
     n_trees= 20 is not less than `oldscore`. Difference: 6
    
     ── 9. Failure: With a bigger dataset, performance is as expected (@test_b_neighb
     n_trees= 40 is not less than `oldscore`. Difference: 2
    
    
     *** caught segfault ***
     address c945125, cause 'memory not mapped'
     An irrecoverable exception occurred. R is aborting now ...
    
     *** caught segfault ***
     address 925f6404, cause 'memory not mapped'
     An irrecoverable exception occurred. R is aborting now ...
Flavor: r-patched-solaris-x86

Version: 0.2.1.1
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    largeVis was compiled with 32-bit types. This will limit the size of the datasets it can process. Consider recompiling with -DARMA_64BIT_WORD
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Warning in unit(c(t, r, b, l), unit) : NAs introduced by coercion
    Error: C stack usage 309236628 is too close to the limit
    
    error: Mat::col(): index out of bounds
    
    error: Mat::col(): index out of bounds
    terminate called after throwing an instance of 'std::logic_error'
     what(): Mat::col(): index out of bounds
Flavor: r-patched-solaris-x86