Last updated on 2024-04-18 22:52:49 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.3.0 | 20.89 | 301.73 | 322.62 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 2.3.0 | 16.55 | 233.30 | 249.85 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 2.3.1 | 455.06 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 2.3.1 | 441.54 | OK | |||
| r-prerel-macos-arm64 | 114.00 | FAIL | ||||
| r-prerel-macos-x86_64 | 2.3.1 | 355.00 | OK | |||
| r-prerel-windows-x86_64 | 2.3.0 | 19.00 | 186.00 | 205.00 | ERROR | |
| r-patched-linux-x86_64 | 2.3.0 | 24.33 | 299.79 | 324.12 | ERROR | |
| r-release-linux-x86_64 | 2.3.0 | 14.80 | 304.74 | 319.54 | ERROR | |
| r-release-macos-arm64 | 2.3.1 | 118.00 | ERROR | |||
| r-release-macos-x86_64 | 2.3.1 | 246.00 | OK | |||
| r-release-windows-x86_64 | 2.3.0 | 24.00 | 262.00 | 286.00 | ERROR | |
| r-oldrel-macos-arm64 | 2.3.1 | 101.00 | ERROR | |||
| r-oldrel-windows-x86_64 | 2.3.0 | 25.00 | 250.00 | 275.00 | ERROR |
Version: 2.3.0
Check: examples
Result: ERROR
Running examples in ‘mlr3spatiotempcv-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: mlr_resamplings_repeated_spcv_knndm
> ### Title: (CAST) Repeated K-fold Nearest Neighbour Distance Matching
> ### Aliases: mlr_resamplings_repeated_spcv_knndm
> ### ResamplingRepeatedSpCVKnndm
>
> ### ** Examples
>
> library(mlr3)
> library(mlr3spatial)
Attaching package: ‘mlr3spatial’
The following objects are masked from ‘package:mlr3spatiotempcv’:
TaskClassifST, TaskRegrST, as_task_classif_st,
as_task_classif_st.DataBackend, as_task_classif_st.TaskClassifST,
as_task_classif_st.data.frame, as_task_classif_st.sf,
as_task_regr_st, as_task_regr_st.DataBackend,
as_task_regr_st.TaskClassifST, as_task_regr_st.TaskRegrST,
as_task_regr_st.data.frame, as_task_regr_st.sf
> set.seed(42)
> simarea = list(matrix(c(0, 0, 0, 100, 100, 100, 100, 0, 0, 0), ncol = 2, byrow = TRUE))
> simarea = sf::st_polygon(simarea)
> train_points = sf::st_sample(simarea, 1000, type = "random")
> train_points = sf::st_as_sf(train_points)
> train_points$target = as.factor(sample(c("TRUE", "FALSE"), 1000, replace = TRUE))
> pred_points = sf::st_sample(simarea, 1000, type = "regular")
>
> task = mlr3spatial::as_task_classif_st(sf::st_as_sf(train_points), "target", positive = "TRUE")
>
> cv_knndm = rsmp("repeated_spcv_knndm", ppoints = pred_points, repeats = 2)
> cv_knndm$instantiate(task)
Error in CAST::knndm(tpoints = points, modeldomain = self$param_set$values$modeldomain, :
unused argument (ppoints = self$param_set$values$ppoints)
Calls: <Anonymous> ... .__ResamplingRepeatedSpCVKnndm__.sample -> map -> lapply -> FUN
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 2.3.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [118s/81s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3spatiotempcv")
+ test_check("mlr3spatiotempcv")
+ }
Loading required package: mlr3
Starting 2 test processes
[ FAIL 6 | WARN 0 | SKIP 23 | PASS 1197 ]
══ Skipped tests (23) ══════════════════════════════════════════════════════════
• On CRAN (18): 'test-1-autoplot.R:40:3', 'test-1-autoplot.R:72:3',
'test-1-autoplot.R:98:3', 'test-1-autoplot.R:130:3',
'test-1-autoplot.R:157:3', 'test-1-autoplot.R:189:3',
'test-1-autoplot.R:224:3', 'test-1-autoplot.R:257:3',
'test-1-autoplot.R:268:3', 'test-1-autoplot.R:315:3',
'test-1-autoplot.R:343:3', 'test-1-autoplot.R:377:3',
'test-2-autoplot.R:129:3', 'test-2-autoplot.R:182:3',
'test-2-autoplot.R:204:3', 'test-2-autoplot.R:246:3',
'test-2-autoplot.R:300:3', 'test-autoplot_buffer.R:19:3'
• On Linux (2): 'test-2-autoplot.R:8:3', 'test-2-autoplot.R:54:3'
• empty test (1): 'test-helper-DataBackend.R:1:1'
• raster cannot be loaded (1): 'test-mlr3pipelines-graph-integration.R:4:3'
• skmeans cannot be loaded (1): 'test-mlr_sptcv_generic.R:70:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-2-autoplot.R:331:3'): plot() works for 'spcv_knndm' ────────────
Error in `CAST::knndm(tpoints = points, modeldomain = self$param_set$values$modeldomain,
ppoints = self$param_set$values$ppoints, k = self$param_set$values$folds,
maxp = self$param_set$values$maxp, clustering = self$param_set$values$clustering,
linkf = self$param_set$values$linkf, samplesize = self$param_set$values$samplesize,
sampling = self$param_set$values$sampling)`: unused argument (ppoints = self$param_set$values$ppoints)
Backtrace:
▆
1. ├─base::suppressMessages(suppressWarnings(rsp$instantiate(task))) at test-2-autoplot.R:331:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::suppressWarnings(rsp$instantiate(task))
4. │ └─base::withCallingHandlers(...)
5. └─rsp$instantiate(task)
6. └─mlr3spatiotempcv:::.__ResamplingRepeatedSpCVKnndm__instantiate(...)
7. └─private$.sample(task$row_ids, task$coordinates(), task$crs)
8. └─mlr3spatiotempcv:::.__ResamplingRepeatedSpCVKnndm__.sample(...)
9. └─mlr3misc::map(...)
10. └─base::lapply(.x, .f, ...)
11. └─mlr3spatiotempcv (local) FUN(X[[i]], ...)
── Error ('test-ResamplingRepeatedSpCVKnndm.R:21:3'): folds can be printed ─────
Error in `CAST::knndm(tpoints = points, modeldomain = self$param_set$values$modeldomain,
ppoints = self$param_set$values$ppoints, k = self$param_set$values$folds,
maxp = self$param_set$values$maxp, clustering = self$param_set$values$clustering,
linkf = self$param_set$values$linkf, samplesize = self$param_set$values$samplesize,
sampling = self$param_set$values$sampling)`: unused argument (ppoints = self$param_set$values$ppoints)
Backtrace:
▆
1. ├─base::suppressMessages(suppressWarnings(rsp$instantiate(task))) at test-ResamplingRepeatedSpCVKnndm.R:21:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::suppressWarnings(rsp$instantiate(task))
4. │ └─base::withCallingHandlers(...)
5. └─rsp$instantiate(task)
6. └─mlr3spatiotempcv:::.__ResamplingRepeatedSpCVKnndm__instantiate(...)
7. └─private$.sample(task$row_ids, task$coordinates(), task$crs)
8. └─mlr3spatiotempcv:::.__ResamplingRepeatedSpCVKnndm__.sample(...)
9. └─mlr3misc::map(...)
10. └─base::lapply(.x, .f, ...)
11. └─mlr3spatiotempcv (local) FUN(X[[i]], ...)
── Error ('test-ResamplingRepeatedSpCVKnndm.R:31:3'): reps can be printed ──────
Error in `CAST::knndm(tpoints = points, modeldomain = self$param_set$values$modeldomain,
ppoints = self$param_set$values$ppoints, k = self$param_set$values$folds,
maxp = self$param_set$values$maxp, clustering = self$param_set$values$clustering,
linkf = self$param_set$values$linkf, samplesize = self$param_set$values$samplesize,
sampling = self$param_set$values$sampling)`: unused argument (ppoints = self$param_set$values$ppoints)
Backtrace:
▆
1. ├─base::suppressMessages(suppressWarnings(rsp$instantiate(task))) at test-ResamplingRepeatedSpCVKnndm.R:31:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::suppressWarnings(rsp$instantiate(task))
4. │ └─base::withCallingHandlers(...)
5. └─rsp$instantiate(task)
6. └─mlr3spatiotempcv:::.__ResamplingRepeatedSpCVKnndm__instantiate(...)
7. └─private$.sample(task$row_ids, task$coordinates(), task$crs)
8. └─mlr3spatiotempcv:::.__ResamplingRepeatedSpCVKnndm__.sample(...)
9. └─mlr3misc::map(...)
10. └─base::lapply(.x, .f, ...)
11. └─mlr3spatiotempcv (local) FUN(X[[i]], ...)
── Error ('test-ResamplingRepeatedSpCVKnndm.R:41:3'): resampling iterations equals folds * repeats ──
Error in `CAST::knndm(tpoints = points, modeldomain = self$param_set$values$modeldomain,
ppoints = self$param_set$values$ppoints, k = self$param_set$values$folds,
maxp = self$param_set$values$maxp, clustering = self$param_set$values$clustering,
linkf = self$param_set$values$linkf, samplesize = self$param_set$values$samplesize,
sampling = self$param_set$values$sampling)`: unused argument (ppoints = self$param_set$values$ppoints)
Backtrace:
▆
1. ├─base::suppressMessages(suppressWarnings(rsp$instantiate(task))) at test-ResamplingRepeatedSpCVKnndm.R:41:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::suppressWarnings(rsp$instantiate(task))
4. │ └─base::withCallingHandlers(...)
5. └─rsp$instantiate(task)
6. └─mlr3spatiotempcv:::.__ResamplingRepeatedSpCVKnndm__instantiate(...)
7. └─private$.sample(task$row_ids, task$coordinates(), task$crs)
8. └─mlr3spatiotempcv:::.__ResamplingRepeatedSpCVKnndm__.sample(...)
9. └─mlr3misc::map(...)
10. └─base::lapply(.x, .f, ...)
11. └─mlr3spatiotempcv (local) FUN(X[[i]], ...)
── Error ('test-ResamplingSpCVKnndm.R:10:3'): mlr3spatiotempcv indices are the same as CAST knndm: modeldomain ──
Error in `CAST::knndm(tpoints = points, modeldomain = self$param_set$values$modeldomain,
ppoints = self$param_set$values$ppoints, k = self$param_set$values$folds,
maxp = self$param_set$values$maxp, clustering = self$param_set$values$clustering,
linkf = self$param_set$values$linkf, samplesize = self$param_set$values$samplesize,
sampling = self$param_set$values$sampling)`: unused argument (ppoints = self$param_set$values$ppoints)
Backtrace:
▆
1. ├─base::suppressMessages(suppressWarnings(rsmp$instantiate(task))) at test-ResamplingSpCVKnndm.R:10:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::suppressWarnings(rsmp$instantiate(task))
4. │ └─base::withCallingHandlers(...)
5. └─rsmp$instantiate(task)
6. └─mlr3spatiotempcv:::.__ResamplingSpCVKnndm__instantiate(...)
7. └─private$.sample(task$row_ids, task$coordinates(), task$crs)
8. └─mlr3spatiotempcv:::.__ResamplingSpCVKnndm__.sample(...)
── Error ('test-ResamplingSpCVKnndm.R:38:3'): mlr3spatiotempcv indices are the same as CAST knndm: ppoints ──
Error in `CAST::knndm(tpoints = points, modeldomain = self$param_set$values$modeldomain,
ppoints = self$param_set$values$ppoints, k = self$param_set$values$folds,
maxp = self$param_set$values$maxp, clustering = self$param_set$values$clustering,
linkf = self$param_set$values$linkf, samplesize = self$param_set$values$samplesize,
sampling = self$param_set$values$sampling)`: unused argument (ppoints = self$param_set$values$ppoints)
Backtrace:
▆
1. ├─base::suppressMessages(suppressWarnings(rsmp$instantiate(task))) at test-ResamplingSpCVKnndm.R:38:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::suppressWarnings(rsmp$instantiate(task))
4. │ └─base::withCallingHandlers(...)
5. └─rsmp$instantiate(task)
6. └─mlr3spatiotempcv:::.__ResamplingSpCVKnndm__instantiate(...)
7. └─private$.sample(task$row_ids, task$coordinates(), task$crs)
8. └─mlr3spatiotempcv:::.__ResamplingSpCVKnndm__.sample(...)
[ FAIL 6 | WARN 0 | SKIP 23 | PASS 1197 ]
Deleting unused snapshots:
• 1-autoplot/autoplot-show-blocks-true-show-labels-true.svg
• 1-autoplot/custom-cv-fold-1-2-sample-fold-n.svg
• 1-autoplot/custom-cv-fold-1-2.svg
• 1-autoplot/custom-cv-fold-1-sample-fold-n.svg
• 1-autoplot/custom-cv-fold-1.svg
• 1-autoplot/custom-cv-sample-fold-n.svg
• 1-autoplot/cv-fold-1-2-groups-col-role.svg
• 1-autoplot/cv-fold-1-2-sample-fold-n.svg
• 1-autoplot/cv-fold-1-2.svg
• 1-autoplot/cv-fold-1-groups-col-role.svg
• 1-autoplot/cv-fold-1-sample-fold-n.svg
• 1-autoplot/cv-fold-1.svg
• 1-autoplot/cv-sample-fold-n.svg
• 1-autoplot/repcv-fold-1-2-rep-1.svg
• 1-autoplot/repcv-fold-1-2-rep-2.svg
• 1-autoplot/repcv-fold-1-rep-1.svg
• 1-autoplot/repcv-fold-1-rep-2.svg
• 1-autoplot/repspcvblock-fold-1-2-rep-1.svg
• 1-autoplot/repspcvblock-fold-1-2-rep-2.svg
• 1-autoplot/repspcvblock-fold-1-rep-1.svg
• 1-autoplot/repspcvblock-fold-1-rep-2.svg
• 1-autoplot/repspcvcoords-fold-1-2-rep-1.svg
• 1-autoplot/repspcvcoords-fold-1-2-rep-2.svg
• 1-autoplot/repspcvcoords-fold-1-2-sample-fold-n.svg
• 1-autoplot/repspcvcoords-fold-1-rep-1.svg
• 1-autoplot/repspcvcoords-fold-1-rep-2.svg
• 1-autoplot/repspcvcoords-fold-1-sample-fold-n.svg
• 1-autoplot/repspcvcoords-sample-fold-n.svg
• 1-autoplot/repspcvenv-fold-1-2-rep-1.svg
• 1-autoplot/repspcvenv-fold-1-2-rep-2.svg
• 1-autoplot/repspcvenv-fold-1-rep-1.svg
• 1-autoplot/repspcvenv-fold-1-rep-2.svg
• 1-autoplot/spcvblock-fold-1-2-sample-fold-n.svg
• 1-autoplot/spcvblock-fold-1-2.svg
• 1-autoplot/spcvblock-fold-1-sample-fold-n.svg
• 1-autoplot/spcvblock-fold-1.svg
• 1-autoplot/spcvblock-sample-fold-n.svg
• 1-autoplot/spcvcoords-fold-1-2.svg
• 1-autoplot/spcvcoords-fold-1.svg
• 1-autoplot/spcvenv-fold-1-2-sample-fold-n.svg
• 1-autoplot/spcvenv-fold-1-2.svg
• 1-autoplot/spcvenv-fold-1-sample-fold-n.svg
• 1-autoplot/spcvenv-fold-1.svg
• 1-autoplot/spcvenv-sample-fold-n.svg
• 2-autoplot/repspcvdisc-fold-1-2-rep-2.svg
• 2-autoplot/repspcvdisc-fold-1-2-sample-fold-n.svg
• 2-autoplot/repspcvdisc-fold-1-rep-1-sample-n-fold.svg
• 2-autoplot/repspcvdisc-fold-1-rep-2.svg
• 2-autoplot/repspcvdisc-fold-1-sample-fold-n.svg
• 2-autoplot/repspcvdisc-sample-fold-n.svg
• 2-autoplot/repspcvknndm-fold-1-2-rep-2.svg
• 2-autoplot/repspcvknndm-fold-1-2-sample-fold-n.svg
• 2-autoplot/repspcvknndm-fold-1-rep-1-sample-n-fold.svg
• 2-autoplot/repspcvknndm-fold-1-rep-2.svg
• 2-autoplot/repspcvknndm-fold-1-sample-fold-n.svg
• 2-autoplot/repspcvknndm-sample-fold-n.svg
• 2-autoplot/repspcvtiles-fold-1-2-rep-2.svg
• 2-autoplot/repspcvtiles-fold-1-2-sample-fold-n.svg
• 2-autoplot/repspcvtiles-fold-1-2.svg
• 2-autoplot/repspcvtiles-fold-1-rep-2.svg
• 2-autoplot/repspcvtiles-fold-1-sample-fold-n.svg
• 2-autoplot/repspcvtiles-fold-1.svg
• 2-autoplot/repspcvtiles-sample-fold-n.svg
• 2-autoplot/repspcvtiles-show-omitted.svg
• 2-autoplot/repsptcvcstf-2d-space-var-fold-1-2-rep-2.svg
• 2-autoplot/repsptcvcstf-2d-space-var-fold-1-rep-2.svg
• 2-autoplot/repsptcvcstf-fold-1-2-rep-1.svg
• 2-autoplot/repsptcvcstf-fold-1-2-rep-2.svg
• 2-autoplot/repsptcvcstf-fold-1-rep-1-sample-fold-n.svg
• 2-autoplot/repsptcvcstf-fold-1-rep-2.svg
• 2-autoplot/spcvdisc-fold-1-2.svg
• 2-autoplot/spcvdisc-fold-1.svg
• 2-autoplot/spcvdisc-show-omitted.svg
• 2-autoplot/spcvknndm-all-test-sets.svg
• 2-autoplot/spcvknndm-fold-1-2.svg
• 2-autoplot/spcvknndm-fold-1.svg
• 2-autoplot/sptcvcstf-2d-space-var-all-test-sets.svg
• 2-autoplot/sptcvcstf-2d-space-var-fold-1-2.svg
• 2-autoplot/sptcvcstf-2d-space-var-fold-1.svg
• 2-autoplot/sptcvcstf-2d-time-var-all-test-sets.svg
• 2-autoplot/sptcvcstf-2d-time-var-fold-1-2-rep-2.svg
• 2-autoplot/sptcvcstf-2d-time-var-fold-1-2-sample-fold-n.svg
• 2-autoplot/sptcvcstf-2d-time-var-fold-1-2.svg
• 2-autoplot/sptcvcstf-2d-time-var-fold-1-rep-2.svg
• 2-autoplot/sptcvcstf-2d-time-var-fold-1-sample-fold-n.svg
• 2-autoplot/sptcvcstf-2d-time-var-fold-1.svg
• 2-autoplot/sptcvcstf-2d-time-var-sample-fold-n.svg
• 2-autoplot/sptcvcstf-3d-time-var-fold-1-2-sample-fold-n.svg
• 2-autoplot/sptcvcstf-3d-time-var-fold-1-2.svg
• 2-autoplot/sptcvcstf-3d-time-var-fold-1-sample-fold-n.svg
• autoplot_buffer/spcvbuffer-fold-1-2.svg
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 2.3.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [102s/92s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3spatiotempcv")
+ test_check("mlr3spatiotempcv")
+ }
Loading required package: mlr3
Starting 2 test processes
[ FAIL 6 | WARN 0 | SKIP 23 | PASS 1197 ]
══ Skipped tests (23) ══════════════════════════════════════════════════════════
• On CRAN (18): 'test-1-autoplot.R:40:3', 'test-1-autoplot.R:72:3',
'test-1-autoplot.R:98:3', 'test-1-autoplot.R:130:3',
'test-1-autoplot.R:157:3', 'test-1-autoplot.R:189:3',
'test-1-autoplot.R:224:3', 'test-1-autoplot.R:257:3',
'test-1-autoplot.R:268:3', 'test-1-autoplot.R:315:3',
'test-1-autoplot.R:343:3', 'test-1-autoplot.R:377:3',
'test-2-autoplot.R:129:3', 'test-2-autoplot.R:182:3',
'test-2-autoplot.R:204:3', 'test-2-autoplot.R:246:3',
'test-2-autoplot.R:300:3', 'test-autoplot_buffer.R:19:3'
• On Linux (2): 'test-2-autoplot.R:8:3', 'test-2-autoplot.R:54:3'
• empty test (1): 'test-helper-DataBackend.R:1:1'
• raster cannot be loaded (1): 'test-mlr3pipelines-graph-integration.R:4:3'
• skmeans cannot be loaded (1): 'test-mlr_sptcv_generic.R:70:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-ResamplingRepeatedSpCVKnndm.R:21:3'): folds can be printed ─────
Error in `CAST::knndm(tpoints = points, modeldomain = self$param_set$values$modeldomain,
ppoints = self$param_set$values$ppoints, k = self$param_set$values$folds,
maxp = self$param_set$values$maxp, clustering = self$param_set$values$clustering,
linkf = self$param_set$values$linkf, samplesize = self$param_set$values$samplesize,
sampling = self$param_set$values$sampling)`: unused argument (ppoints = self$param_set$values$ppoints)
Backtrace:
▆
1. ├─base::suppressMessages(suppressWarnings(rsp$instantiate(task))) at test-ResamplingRepeatedSpCVKnndm.R:21:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::suppressWarnings(rsp$instantiate(task))
4. │ └─base::withCallingHandlers(...)
5. └─rsp$instantiate(task)
6. └─mlr3spatiotempcv:::.__ResamplingRepeatedSpCVKnndm__instantiate(...)
7. └─private$.sample(task$row_ids, task$coordinates(), task$crs)
8. └─mlr3spatiotempcv:::.__ResamplingRepeatedSpCVKnndm__.sample(...)
9. └─mlr3misc::map(...)
10. └─base::lapply(.x, .f, ...)
11. └─mlr3spatiotempcv (local) FUN(X[[i]], ...)
── Error ('test-ResamplingRepeatedSpCVKnndm.R:31:3'): reps can be printed ──────
Error in `CAST::knndm(tpoints = points, modeldomain = self$param_set$values$modeldomain,
ppoints = self$param_set$values$ppoints, k = self$param_set$values$folds,
maxp = self$param_set$values$maxp, clustering = self$param_set$values$clustering,
linkf = self$param_set$values$linkf, samplesize = self$param_set$values$samplesize,
sampling = self$param_set$values$sampling)`: unused argument (ppoints = self$param_set$values$ppoints)
Backtrace:
▆
1. ├─base::suppressMessages(suppressWarnings(rsp$instantiate(task))) at test-ResamplingRepeatedSpCVKnndm.R:31:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::suppressWarnings(rsp$instantiate(task))
4. │ └─base::withCallingHandlers(...)
5. └─rsp$instantiate(task)
6. └─mlr3spatiotempcv:::.__ResamplingRepeatedSpCVKnndm__instantiate(...)
7. └─private$.sample(task$row_ids, task$coordinates(), task$crs)
8. └─mlr3spatiotempcv:::.__ResamplingRepeatedSpCVKnndm__.sample(...)
9. └─mlr3misc::map(...)
10. └─base::lapply(.x, .f, ...)
11. └─mlr3spatiotempcv (local) FUN(X[[i]], ...)
── Error ('test-ResamplingRepeatedSpCVKnndm.R:41:3'): resampling iterations equals folds * repeats ──
Error in `CAST::knndm(tpoints = points, modeldomain = self$param_set$values$modeldomain,
ppoints = self$param_set$values$ppoints, k = self$param_set$values$folds,
maxp = self$param_set$values$maxp, clustering = self$param_set$values$clustering,
linkf = self$param_set$values$linkf, samplesize = self$param_set$values$samplesize,
sampling = self$param_set$values$sampling)`: unused argument (ppoints = self$param_set$values$ppoints)
Backtrace:
▆
1. ├─base::suppressMessages(suppressWarnings(rsp$instantiate(task))) at test-ResamplingRepeatedSpCVKnndm.R:41:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::suppressWarnings(rsp$instantiate(task))
4. │ └─base::withCallingHandlers(...)
5. └─rsp$instantiate(task)
6. └─mlr3spatiotempcv:::.__ResamplingRepeatedSpCVKnndm__instantiate(...)
7. └─private$.sample(task$row_ids, task$coordinates(), task$crs)
8. └─mlr3spatiotempcv:::.__ResamplingRepeatedSpCVKnndm__.sample(...)
9. └─mlr3misc::map(...)
10. └─base::lapply(.x, .f, ...)
11. └─mlr3spatiotempcv (local) FUN(X[[i]], ...)
── Error ('test-2-autoplot.R:331:3'): plot() works for 'spcv_knndm' ────────────
Error in `CAST::knndm(tpoints = points, modeldomain = self$param_set$values$modeldomain,
ppoints = self$param_set$values$ppoints, k = self$param_set$values$folds,
maxp = self$param_set$values$maxp, clustering = self$param_set$values$clustering,
linkf = self$param_set$values$linkf, samplesize = self$param_set$values$samplesize,
sampling = self$param_set$values$sampling)`: unused argument (ppoints = self$param_set$values$ppoints)
Backtrace:
▆
1. ├─base::suppressMessages(suppressWarnings(rsp$instantiate(task))) at test-2-autoplot.R:331:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::suppressWarnings(rsp$instantiate(task))
4. │ └─base::withCallingHandlers(...)
5. └─rsp$instantiate(task)
6. └─mlr3spatiotempcv:::.__ResamplingRepeatedSpCVKnndm__instantiate(...)
7. └─private$.sample(task$row_ids, task$coordinates(), task$crs)
8. └─mlr3spatiotempcv:::.__ResamplingRepeatedSpCVKnndm__.sample(...)
9. └─mlr3misc::map(...)
10. └─base::lapply(.x, .f, ...)
11. └─mlr3spatiotempcv (local) FUN(X[[i]], ...)
── Error ('test-ResamplingSpCVKnndm.R:10:3'): mlr3spatiotempcv indices are the same as CAST knndm: modeldomain ──
Error in `CAST::knndm(tpoints = points, modeldomain = self$param_set$values$modeldomain,
ppoints = self$param_set$values$ppoints, k = self$param_set$values$folds,
maxp = self$param_set$values$maxp, clustering = self$param_set$values$clustering,
linkf = self$param_set$values$linkf, samplesize = self$param_set$values$samplesize,
sampling = self$param_set$values$sampling)`: unused argument (ppoints = self$param_set$values$ppoints)
Backtrace:
▆
1. ├─base::suppressMessages(suppressWarnings(rsmp$instantiate(task))) at test-ResamplingSpCVKnndm.R:10:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::suppressWarnings(rsmp$instantiate(task))
4. │ └─base::withCallingHandlers(...)
5. └─rsmp$instantiate(task)
6. └─mlr3spatiotempcv:::.__ResamplingSpCVKnndm__instantiate(...)
7. └─private$.sample(task$row_ids, task$coordinates(), task$crs)
8. └─mlr3spatiotempcv:::.__ResamplingSpCVKnndm__.sample(...)
── Error ('test-ResamplingSpCVKnndm.R:38:3'): mlr3spatiotempcv indices are the same as CAST knndm: ppoints ──
Error in `CAST::knndm(tpoints = points, modeldomain = self$param_set$values$modeldomain,
ppoints = self$param_set$values$ppoints, k = self$param_set$values$folds,
maxp = self$param_set$values$maxp, clustering = self$param_set$values$clustering,
linkf = self$param_set$values$linkf, samplesize = self$param_set$values$samplesize,
sampling = self$param_set$values$sampling)`: unused argument (ppoints = self$param_set$values$ppoints)
Backtrace:
▆
1. ├─base::suppressMessages(suppressWarnings(rsmp$instantiate(task))) at test-ResamplingSpCVKnndm.R:38:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::suppressWarnings(rsmp$instantiate(task))
4. │ └─base::withCallingHandlers(...)
5. └─rsmp$instantiate(task)
6. └─mlr3spatiotempcv:::.__ResamplingSpCVKnndm__instantiate(...)
7. └─private$.sample(task$row_ids, task$coordinates(), task$crs)
8. └─mlr3spatiotempcv:::.__ResamplingSpCVKnndm__.sample(...)
[ FAIL 6 | WARN 0 | SKIP 23 | PASS 1197 ]
Deleting unused snapshots:
• 1-autoplot/autoplot-show-blocks-true-show-labels-true.svg
• 1-autoplot/custom-cv-fold-1-2-sample-fold-n.svg
• 1-autoplot/custom-cv-fold-1-2.svg
• 1-autoplot/custom-cv-fold-1-sample-fold-n.svg
• 1-autoplot/custom-cv-fold-1.svg
• 1-autoplot/custom-cv-sample-fold-n.svg
• 1-autoplot/cv-fold-1-2-groups-col-role.svg
• 1-autoplot/cv-fold-1-2-sample-fold-n.svg
• 1-autoplot/cv-fold-1-2.svg
• 1-autoplot/cv-fold-1-groups-col-role.svg
• 1-autoplot/cv-fold-1-sample-fold-n.svg
• 1-autoplot/cv-fold-1.svg
• 1-autoplot/cv-sample-fold-n.svg
• 1-autoplot/repcv-fold-1-2-rep-1.svg
• 1-autoplot/repcv-fold-1-2-rep-2.svg
• 1-autoplot/repcv-fold-1-rep-1.svg
• 1-autoplot/repcv-fold-1-rep-2.svg
• 1-autoplot/repspcvblock-fold-1-2-rep-1.svg
• 1-autoplot/repspcvblock-fold-1-2-rep-2.svg
• 1-autoplot/repspcvblock-fold-1-rep-1.svg
• 1-autoplot/repspcvblock-fold-1-rep-2.svg
• 1-autoplot/repspcvcoords-fold-1-2-rep-1.svg
• 1-autoplot/repspcvcoords-fold-1-2-rep-2.svg
• 1-autoplot/repspcvcoords-fold-1-2-sample-fold-n.svg
• 1-autoplot/repspcvcoords-fold-1-rep-1.svg
• 1-autoplot/repspcvcoords-fold-1-rep-2.svg
• 1-autoplot/repspcvcoords-fold-1-sample-fold-n.svg
• 1-autoplot/repspcvcoords-sample-fold-n.svg
• 1-autoplot/repspcvenv-fold-1-2-rep-1.svg
• 1-autoplot/repspcvenv-fold-1-2-rep-2.svg
• 1-autoplot/repspcvenv-fold-1-rep-1.svg
• 1-autoplot/repspcvenv-fold-1-rep-2.svg
• 1-autoplot/spcvblock-fold-1-2-sample-fold-n.svg
• 1-autoplot/spcvblock-fold-1-2.svg
• 1-autoplot/spcvblock-fold-1-sample-fold-n.svg
• 1-autoplot/spcvblock-fold-1.svg
• 1-autoplot/spcvblock-sample-fold-n.svg
• 1-autoplot/spcvcoords-fold-1-2.svg
• 1-autoplot/spcvcoords-fold-1.svg
• 1-autoplot/spcvenv-fold-1-2-sample-fold-n.svg
• 1-autoplot/spcvenv-fold-1-2.svg
• 1-autoplot/spcvenv-fold-1-sample-fold-n.svg
• 1-autoplot/spcvenv-fold-1.svg
• 1-autoplot/spcvenv-sample-fold-n.svg
• 2-autoplot/repspcvdisc-fold-1-2-rep-2.svg
• 2-autoplot/repspcvdisc-fold-1-2-sample-fold-n.svg
• 2-autoplot/repspcvdisc-fold-1-rep-1-sample-n-fold.svg
• 2-autoplot/repspcvdisc-fold-1-rep-2.svg
• 2-autoplot/repspcvdisc-fold-1-sample-fold-n.svg
• 2-autoplot/repspcvdisc-sample-fold-n.svg
• 2-autoplot/repspcvknndm-fold-1-2-rep-2.svg
• 2-autoplot/repspcvknndm-fold-1-2-sample-fold-n.svg
• 2-autoplot/repspcvknndm-fold-1-rep-1-sample-n-fold.svg
• 2-autoplot/repspcvknndm-fold-1-rep-2.svg
• 2-autoplot/repspcvknndm-fold-1-sample-fold-n.svg
• 2-autoplot/repspcvknndm-sample-fold-n.svg
• 2-autoplot/repspcvtiles-fold-1-2-rep-2.svg
• 2-autoplot/repspcvtiles-fold-1-2-sample-fold-n.svg
• 2-autoplot/repspcvtiles-fold-1-2.svg
• 2-autoplot/repspcvtiles-fold-1-rep-2.svg
• 2-autoplot/repspcvtiles-fold-1-sample-fold-n.svg
• 2-autoplot/repspcvtiles-fold-1.svg
• 2-autoplot/repspcvtiles-sample-fold-n.svg
• 2-autoplot/repspcvtiles-show-omitted.svg
• 2-autoplot/repsptcvcstf-2d-space-var-fold-1-2-rep-2.svg
• 2-autoplot/repsptcvcstf-2d-space-var-fold-1-rep-2.svg
• 2-autoplot/repsptcvcstf-fold-1-2-rep-1.svg
• 2-autoplot/repsptcvcstf-fold-1-2-rep-2.svg
• 2-autoplot/repsptcvcstf-fold-1-rep-1-sample-fold-n.svg
• 2-autoplot/repsptcvcstf-fold-1-rep-2.svg
• 2-autoplot/spcvdisc-fold-1-2.svg
• 2-autoplot/spcvdisc-fold-1.svg
• 2-autoplot/spcvdisc-show-omitted.svg
• 2-autoplot/spcvknndm-all-test-sets.svg
• 2-autoplot/spcvknndm-fold-1-2.svg
• 2-autoplot/spcvknndm-fold-1.svg
• 2-autoplot/sptcvcstf-2d-space-var-all-test-sets.svg
• 2-autoplot/sptcvcstf-2d-space-var-fold-1-2.svg
• 2-autoplot/sptcvcstf-2d-space-var-fold-1.svg
• 2-autoplot/sptcvcstf-2d-time-var-all-test-sets.svg
• 2-autoplot/sptcvcstf-2d-time-var-fold-1-2-rep-2.svg
• 2-autoplot/sptcvcstf-2d-time-var-fold-1-2-sample-fold-n.svg
• 2-autoplot/sptcvcstf-2d-time-var-fold-1-2.svg
• 2-autoplot/sptcvcstf-2d-time-var-fold-1-rep-2.svg
• 2-autoplot/sptcvcstf-2d-time-var-fold-1-sample-fold-n.svg
• 2-autoplot/sptcvcstf-2d-time-var-fold-1.svg
• 2-autoplot/sptcvcstf-2d-time-var-sample-fold-n.svg
• 2-autoplot/sptcvcstf-3d-time-var-fold-1-2-sample-fold-n.svg
• 2-autoplot/sptcvcstf-3d-time-var-fold-1-2.svg
• 2-autoplot/sptcvcstf-3d-time-var-fold-1-sample-fold-n.svg
• autoplot_buffer/spcvbuffer-fold-1-2.svg
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 2.3.1
Check: examples
Result: ERROR
Running examples in ‘mlr3spatiotempcv-Ex.R’ failed
The error most likely occurred in:
> ### Name: mlr_resamplings_repeated_spcv_knndm
> ### Title: (CAST) Repeated K-fold Nearest Neighbour Distance Matching
> ### Aliases: mlr_resamplings_repeated_spcv_knndm
> ### ResamplingRepeatedSpCVKnndm
>
> ### ** Examples
>
> library(mlr3)
> library(mlr3spatial)
Attaching package: ‘mlr3spatial’
The following objects are masked from ‘package:mlr3spatiotempcv’:
TaskClassifST, TaskRegrST, as_task_classif_st,
as_task_classif_st.DataBackend, as_task_classif_st.TaskClassifST,
as_task_classif_st.data.frame, as_task_classif_st.sf,
as_task_regr_st, as_task_regr_st.DataBackend,
as_task_regr_st.TaskClassifST, as_task_regr_st.TaskRegrST,
as_task_regr_st.data.frame, as_task_regr_st.sf
> set.seed(42)
> simarea = list(matrix(c(0, 0, 0, 100, 100, 100, 100, 0, 0, 0), ncol = 2, byrow = TRUE))
> simarea = sf::st_polygon(simarea)
> train_points = sf::st_sample(simarea, 1000, type = "random")
> train_points = sf::st_as_sf(train_points)
> train_points$target = as.factor(sample(c("TRUE", "FALSE"), 1000, replace = TRUE))
> pred_points = sf::st_sample(simarea, 1000, type = "regular")
>
> task = mlr3spatial::as_task_classif_st(sf::st_as_sf(train_points), "target", positive = "TRUE")
>
> cv_knndm = rsmp("repeated_spcv_knndm", predpoints = pred_points, repeats = 2)
> cv_knndm$instantiate(task)
Error in CAST::knndm(tpoints = points, modeldomain = self$param_set$values$modeldomain, :
unused argument (predpoints = self$param_set$values$predpoints)
Calls: <Anonymous> ... .__ResamplingRepeatedSpCVKnndm__.sample -> map -> lapply -> FUN
Execution halted
Flavors: r-prerel-macos-arm64, r-release-macos-arm64, r-oldrel-macos-arm64
Version: 2.3.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [47s/32s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
• 2-autoplot/sptcvcstf-2d-space-var-fold-1-2.svg
• 2-autoplot/sptcvcstf-2d-space-var-fold-1.svg
• 2-autoplot/sptcvcstf-2d-time-var-fold-1-2-rep-2.svg
• 2-autoplot/sptcvcstf-2d-time-var-fold-1-2-sample-fold-n.svg
• 2-autoplot/sptcvcstf-2d-time-var-fold-1-2.svg
• 2-autoplot/sptcvcstf-2d-time-var-fold-1-rep-2.svg
• 2-autoplot/sptcvcstf-2d-time-var-fold-1-sample-fold-n.svg
• 2-autoplot/sptcvcstf-2d-time-var-fold-1.svg
• 2-autoplot/sptcvcstf-2d-time-var-sample-fold-n.svg
• 2-autoplot/sptcvcstf-3d-time-var-fold-1-2-sample-fold-n.svg
• 2-autoplot/sptcvcstf-3d-time-var-fold-1-2.svg
• 2-autoplot/sptcvcstf-3d-time-var-fold-1-sample-fold-n.svg
• autoplot_buffer/spcvbuffer-fold-1-2.svg
Error: Test failures
Execution halted
Flavor: r-prerel-macos-arm64
Version: 2.3.1
Check: re-building of vignette outputs
Result: FAIL
Flavor: r-prerel-macos-arm64
Version: 2.3.0
Check: examples
Result: ERROR
Running examples in 'mlr3spatiotempcv-Ex.R' failed
The error most likely occurred in:
> ### Name: mlr_resamplings_repeated_spcv_knndm
> ### Title: (CAST) Repeated K-fold Nearest Neighbour Distance Matching
> ### Aliases: mlr_resamplings_repeated_spcv_knndm
> ### ResamplingRepeatedSpCVKnndm
>
> ### ** Examples
>
> library(mlr3)
> library(mlr3spatial)
Attaching package: 'mlr3spatial'
The following objects are masked from 'package:mlr3spatiotempcv':
TaskClassifST, TaskRegrST, as_task_classif_st,
as_task_classif_st.DataBackend, as_task_classif_st.TaskClassifST,
as_task_classif_st.data.frame, as_task_classif_st.sf,
as_task_regr_st, as_task_regr_st.DataBackend,
as_task_regr_st.TaskClassifST, as_task_regr_st.TaskRegrST,
as_task_regr_st.data.frame, as_task_regr_st.sf
> set.seed(42)
> simarea = list(matrix(c(0, 0, 0, 100, 100, 100, 100, 0, 0, 0), ncol = 2, byrow = TRUE))
> simarea = sf::st_polygon(simarea)
> train_points = sf::st_sample(simarea, 1000, type = "random")
> train_points = sf::st_as_sf(train_points)
> train_points$target = as.factor(sample(c("TRUE", "FALSE"), 1000, replace = TRUE))
> pred_points = sf::st_sample(simarea, 1000, type = "regular")
>
> task = mlr3spatial::as_task_classif_st(sf::st_as_sf(train_points), "target", positive = "TRUE")
>
> cv_knndm = rsmp("repeated_spcv_knndm", ppoints = pred_points, repeats = 2)
> cv_knndm$instantiate(task)
Error in CAST::knndm(tpoints = points, modeldomain = self$param_set$values$modeldomain, :
unused argument (ppoints = self$param_set$values$ppoints)
Calls: <Anonymous> ... .__ResamplingRepeatedSpCVKnndm__.sample -> map -> lapply -> FUN
Execution halted
Flavors: r-prerel-windows-x86_64, r-release-windows-x86_64, r-oldrel-windows-x86_64
Version: 2.3.0
Check: tests
Result: ERROR
Running 'testthat.R' [46s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3spatiotempcv")
+ test_check("mlr3spatiotempcv")
+ }
Loading required package: mlr3
Starting 2 test processes
[ FAIL 6 | WARN 0 | SKIP 23 | PASS 1197 ]
══ Skipped tests (23) ══════════════════════════════════════════════════════════
• On CRAN (18): 'test-1-autoplot.R:40:3', 'test-1-autoplot.R:72:3',
'test-1-autoplot.R:98:3', 'test-1-autoplot.R:130:3',
'test-1-autoplot.R:157:3', 'test-1-autoplot.R:189:3',
'test-1-autoplot.R:224:3', 'test-1-autoplot.R:257:3',
'test-1-autoplot.R:268:3', 'test-1-autoplot.R:315:3',
'test-1-autoplot.R:343:3', 'test-1-autoplot.R:377:3',
'test-2-autoplot.R:129:3', 'test-2-autoplot.R:182:3',
'test-2-autoplot.R:204:3', 'test-2-autoplot.R:246:3',
'test-2-autoplot.R:300:3', 'test-autoplot_buffer.R:19:3'
• On Windows (2): 'test-2-autoplot.R:9:3', 'test-2-autoplot.R:55:3'
• empty test (1): 'test-helper-DataBackend.R:1:1'
• raster cannot be loaded (1): 'test-mlr3pipelines-graph-integration.R:4:3'
• skmeans cannot be loaded (1): 'test-mlr_sptcv_generic.R:70:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-ResamplingRepeatedSpCVKnndm.R:21:3'): folds can be printed ─────
Error in `CAST::knndm(tpoints = points, modeldomain = self$param_set$values$modeldomain,
ppoints = self$param_set$values$ppoints, k = self$param_set$values$folds,
maxp = self$param_set$values$maxp, clustering = self$param_set$values$clustering,
linkf = self$param_set$values$linkf, samplesize = self$param_set$values$samplesize,
sampling = self$param_set$values$sampling)`: unused argument (ppoints = self$param_set$values$ppoints)
Backtrace:
▆
1. ├─base::suppressMessages(suppressWarnings(rsp$instantiate(task))) at test-ResamplingRepeatedSpCVKnndm.R:21:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::suppressWarnings(rsp$instantiate(task))
4. │ └─base::withCallingHandlers(...)
5. └─rsp$instantiate(task)
6. └─mlr3spatiotempcv:::.__ResamplingRepeatedSpCVKnndm__instantiate(...)
7. └─private$.sample(task$row_ids, task$coordinates(), task$crs)
8. └─mlr3spatiotempcv:::.__ResamplingRepeatedSpCVKnndm__.sample(...)
9. └─mlr3misc::map(...)
10. └─base::lapply(.x, .f, ...)
11. └─mlr3spatiotempcv (local) FUN(X[[i]], ...)
── Error ('test-ResamplingRepeatedSpCVKnndm.R:31:3'): reps can be printed ──────
Error in `CAST::knndm(tpoints = points, modeldomain = self$param_set$values$modeldomain,
ppoints = self$param_set$values$ppoints, k = self$param_set$values$folds,
maxp = self$param_set$values$maxp, clustering = self$param_set$values$clustering,
linkf = self$param_set$values$linkf, samplesize = self$param_set$values$samplesize,
sampling = self$param_set$values$sampling)`: unused argument (ppoints = self$param_set$values$ppoints)
Backtrace:
▆
1. ├─base::suppressMessages(suppressWarnings(rsp$instantiate(task))) at test-ResamplingRepeatedSpCVKnndm.R:31:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::suppressWarnings(rsp$instantiate(task))
4. │ └─base::withCallingHandlers(...)
5. └─rsp$instantiate(task)
6. └─mlr3spatiotempcv:::.__ResamplingRepeatedSpCVKnndm__instantiate(...)
7. └─private$.sample(task$row_ids, task$coordinates(), task$crs)
8. └─mlr3spatiotempcv:::.__ResamplingRepeatedSpCVKnndm__.sample(...)
9. └─mlr3misc::map(...)
10. └─base::lapply(.x, .f, ...)
11. └─mlr3spatiotempcv (local) FUN(X[[i]], ...)
── Error ('test-ResamplingRepeatedSpCVKnndm.R:41:3'): resampling iterations equals folds * repeats ──
Error in `CAST::knndm(tpoints = points, modeldomain = self$param_set$values$modeldomain,
ppoints = self$param_set$values$ppoints, k = self$param_set$values$folds,
maxp = self$param_set$values$maxp, clustering = self$param_set$values$clustering,
linkf = self$param_set$values$linkf, samplesize = self$param_set$values$samplesize,
sampling = self$param_set$values$sampling)`: unused argument (ppoints = self$param_set$values$ppoints)
Backtrace:
▆
1. ├─base::suppressMessages(suppressWarnings(rsp$instantiate(task))) at test-ResamplingRepeatedSpCVKnndm.R:41:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::suppressWarnings(rsp$instantiate(task))
4. │ └─base::withCallingHandlers(...)
5. └─rsp$instantiate(task)
6. └─mlr3spatiotempcv:::.__ResamplingRepeatedSpCVKnndm__instantiate(...)
7. └─private$.sample(task$row_ids, task$coordinates(), task$crs)
8. └─mlr3spatiotempcv:::.__ResamplingRepeatedSpCVKnndm__.sample(...)
9. └─mlr3misc::map(...)
10. └─base::lapply(.x, .f, ...)
11. └─mlr3spatiotempcv (local) FUN(X[[i]], ...)
── Error ('test-ResamplingSpCVKnndm.R:10:3'): mlr3spatiotempcv indices are the same as CAST knndm: modeldomain ──
Error in `CAST::knndm(tpoints = points, modeldomain = self$param_set$values$modeldomain,
ppoints = self$param_set$values$ppoints, k = self$param_set$values$folds,
maxp = self$param_set$values$maxp, clustering = self$param_set$values$clustering,
linkf = self$param_set$values$linkf, samplesize = self$param_set$values$samplesize,
sampling = self$param_set$values$sampling)`: unused argument (ppoints = self$param_set$values$ppoints)
Backtrace:
▆
1. ├─base::suppressMessages(suppressWarnings(rsmp$instantiate(task))) at test-ResamplingSpCVKnndm.R:10:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::suppressWarnings(rsmp$instantiate(task))
4. │ └─base::withCallingHandlers(...)
5. └─rsmp$instantiate(task)
6. └─mlr3spatiotempcv:::.__ResamplingSpCVKnndm__instantiate(...)
7. └─private$.sample(task$row_ids, task$coordinates(), task$crs)
8. └─mlr3spatiotempcv:::.__ResamplingSpCVKnndm__.sample(...)
── Error ('test-ResamplingSpCVKnndm.R:38:3'): mlr3spatiotempcv indices are the same as CAST knndm: ppoints ──
Error in `CAST::knndm(tpoints = points, modeldomain = self$param_set$values$modeldomain,
ppoints = self$param_set$values$ppoints, k = self$param_set$values$folds,
maxp = self$param_set$values$maxp, clustering = self$param_set$values$clustering,
linkf = self$param_set$values$linkf, samplesize = self$param_set$values$samplesize,
sampling = self$param_set$values$sampling)`: unused argument (ppoints = self$param_set$values$ppoints)
Backtrace:
▆
1. ├─base::suppressMessages(suppressWarnings(rsmp$instantiate(task))) at test-ResamplingSpCVKnndm.R:38:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::suppressWarnings(rsmp$instantiate(task))
4. │ └─base::withCallingHandlers(...)
5. └─rsmp$instantiate(task)
6. └─mlr3spatiotempcv:::.__ResamplingSpCVKnndm__instantiate(...)
7. └─private$.sample(task$row_ids, task$coordinates(), task$crs)
8. └─mlr3spatiotempcv:::.__ResamplingSpCVKnndm__.sample(...)
── Error ('test-2-autoplot.R:331:3'): plot() works for 'spcv_knndm' ────────────
Error in `CAST::knndm(tpoints = points, modeldomain = self$param_set$values$modeldomain,
ppoints = self$param_set$values$ppoints, k = self$param_set$values$folds,
maxp = self$param_set$values$maxp, clustering = self$param_set$values$clustering,
linkf = self$param_set$values$linkf, samplesize = self$param_set$values$samplesize,
sampling = self$param_set$values$sampling)`: unused argument (ppoints = self$param_set$values$ppoints)
Backtrace:
▆
1. ├─base::suppressMessages(suppressWarnings(rsp$instantiate(task))) at test-2-autoplot.R:331:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::suppressWarnings(rsp$instantiate(task))
4. │ └─base::withCallingHandlers(...)
5. └─rsp$instantiate(task)
6. └─mlr3spatiotempcv:::.__ResamplingRepeatedSpCVKnndm__instantiate(...)
7. └─private$.sample(task$row_ids, task$coordinates(), task$crs)
8. └─mlr3spatiotempcv:::.__ResamplingRepeatedSpCVKnndm__.sample(...)
9. └─mlr3misc::map(...)
10. └─base::lapply(.x, .f, ...)
11. └─mlr3spatiotempcv (local) FUN(X[[i]], ...)
[ FAIL 6 | WARN 0 | SKIP 23 | PASS 1197 ]
Deleting unused snapshots:
• 1-autoplot/autoplot-show-blocks-true-show-labels-true.svg
• 1-autoplot/custom-cv-fold-1-2-sample-fold-n.svg
• 1-autoplot/custom-cv-fold-1-2.svg
• 1-autoplot/custom-cv-fold-1-sample-fold-n.svg
• 1-autoplot/custom-cv-fold-1.svg
• 1-autoplot/custom-cv-sample-fold-n.svg
• 1-autoplot/cv-fold-1-2-groups-col-role.svg
• 1-autoplot/cv-fold-1-2-sample-fold-n.svg
• 1-autoplot/cv-fold-1-2.svg
• 1-autoplot/cv-fold-1-groups-col-role.svg
• 1-autoplot/cv-fold-1-sample-fold-n.svg
• 1-autoplot/cv-fold-1.svg
• 1-autoplot/cv-sample-fold-n.svg
• 1-autoplot/repcv-fold-1-2-rep-1.svg
• 1-autoplot/repcv-fold-1-2-rep-2.svg
• 1-autoplot/repcv-fold-1-rep-1.svg
• 1-autoplot/repcv-fold-1-rep-2.svg
• 1-autoplot/repspcvblock-fold-1-2-rep-1.svg
• 1-autoplot/repspcvblock-fold-1-2-rep-2.svg
• 1-autoplot/repspcvblock-fold-1-rep-1.svg
• 1-autoplot/repspcvblock-fold-1-rep-2.svg
• 1-autoplot/repspcvcoords-fold-1-2-rep-1.svg
• 1-autoplot/repspcvcoords-fold-1-2-rep-2.svg
• 1-autoplot/repspcvcoords-fold-1-2-sample-fold-n.svg
• 1-autoplot/repspcvcoords-fold-1-rep-1.svg
• 1-autoplot/repspcvcoords-fold-1-rep-2.svg
• 1-autoplot/repspcvcoords-fold-1-sample-fold-n.svg
• 1-autoplot/repspcvcoords-sample-fold-n.svg
• 1-autoplot/repspcvenv-fold-1-2-rep-1.svg
• 1-autoplot/repspcvenv-fold-1-2-rep-2.svg
• 1-autoplot/repspcvenv-fold-1-rep-1.svg
• 1-autoplot/repspcvenv-fold-1-rep-2.svg
• 1-autoplot/spcvblock-fold-1-2-sample-fold-n.svg
• 1-autoplot/spcvblock-fold-1-2.svg
• 1-autoplot/spcvblock-fold-1-sample-fold-n.svg
• 1-autoplot/spcvblock-fold-1.svg
• 1-autoplot/spcvblock-sample-fold-n.svg
• 1-autoplot/spcvcoords-fold-1-2.svg
• 1-autoplot/spcvcoords-fold-1.svg
• 1-autoplot/spcvenv-fold-1-2-sample-fold-n.svg
• 1-autoplot/spcvenv-fold-1-2.svg
• 1-autoplot/spcvenv-fold-1-sample-fold-n.svg
• 1-autoplot/spcvenv-fold-1.svg
• 1-autoplot/spcvenv-sample-fold-n.svg
• 2-autoplot/repspcvdisc-fold-1-2-rep-2.svg
• 2-autoplot/repspcvdisc-fold-1-2-sample-fold-n.svg
• 2-autoplot/repspcvdisc-fold-1-rep-1-sample-n-fold.svg
• 2-autoplot/repspcvdisc-fold-1-rep-2.svg
• 2-autoplot/repspcvdisc-fold-1-sample-fold-n.svg
• 2-autoplot/repspcvdisc-sample-fold-n.svg
• 2-autoplot/repspcvknndm-fold-1-2-rep-2.svg
• 2-autoplot/repspcvknndm-fold-1-2-sample-fold-n.svg
• 2-autoplot/repspcvknndm-fold-1-rep-1-sample-n-fold.svg
• 2-autoplot/repspcvknndm-fold-1-rep-2.svg
• 2-autoplot/repspcvknndm-fold-1-sample-fold-n.svg
• 2-autoplot/repspcvknndm-sample-fold-n.svg
• 2-autoplot/repspcvtiles-fold-1-2-rep-2.svg
• 2-autoplot/repspcvtiles-fold-1-2-sample-fold-n.svg
• 2-autoplot/repspcvtiles-fold-1-2.svg
• 2-autoplot/repspcvtiles-fold-1-rep-2.svg
• 2-autoplot/repspcvtiles-fold-1-sample-fold-n.svg
• 2-autoplot/repspcvtiles-fold-1.svg
• 2-autoplot/repspcvtiles-sample-fold-n.svg
• 2-autoplot/repspcvtiles-show-omitted.svg
• 2-autoplot/repsptcvcstf-2d-space-var-fold-1-2-rep-2.svg
• 2-autoplot/repsptcvcstf-2d-space-var-fold-1-rep-2.svg
• 2-autoplot/repsptcvcstf-fold-1-2-rep-1.svg
• 2-autoplot/repsptcvcstf-fold-1-2-rep-2.svg
• 2-autoplot/repsptcvcstf-fold-1-rep-1-sample-fold-n.svg
• 2-autoplot/repsptcvcstf-fold-1-rep-2.svg
• 2-autoplot/spcvdisc-fold-1-2.svg
• 2-autoplot/spcvdisc-fold-1.svg
• 2-autoplot/spcvdisc-show-omitted.svg
• 2-autoplot/spcvknndm-all-test-sets.svg
• 2-autoplot/spcvknndm-fold-1-2.svg
• 2-autoplot/spcvknndm-fold-1.svg
• 2-autoplot/sptcvcstf-2d-space-var-all-test-sets.svg
• 2-autoplot/sptcvcstf-2d-space-var-fold-1-2.svg
• 2-autoplot/sptcvcstf-2d-space-var-fold-1.svg
• 2-autoplot/sptcvcstf-2d-time-var-all-test-sets.svg
• 2-autoplot/sptcvcstf-2d-time-var-fold-1-2-rep-2.svg
• 2-autoplot/sptcvcstf-2d-time-var-fold-1-2-sample-fold-n.svg
• 2-autoplot/sptcvcstf-2d-time-var-fold-1-2.svg
• 2-autoplot/sptcvcstf-2d-time-var-fold-1-rep-2.svg
• 2-autoplot/sptcvcstf-2d-time-var-fold-1-sample-fold-n.svg
• 2-autoplot/sptcvcstf-2d-time-var-fold-1.svg
• 2-autoplot/sptcvcstf-2d-time-var-sample-fold-n.svg
• 2-autoplot/sptcvcstf-3d-time-var-fold-1-2-sample-fold-n.svg
• 2-autoplot/sptcvcstf-3d-time-var-fold-1-2.svg
• 2-autoplot/sptcvcstf-3d-time-var-fold-1-sample-fold-n.svg
• autoplot_buffer/spcvbuffer-fold-1-2.svg
Error: Test failures
Execution halted
Flavor: r-prerel-windows-x86_64
Version: 2.3.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [126s/78s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3spatiotempcv")
+ test_check("mlr3spatiotempcv")
+ }
Loading required package: mlr3
Starting 2 test processes
[ FAIL 6 | WARN 0 | SKIP 23 | PASS 1197 ]
══ Skipped tests (23) ══════════════════════════════════════════════════════════
• On CRAN (18): 'test-1-autoplot.R:40:3', 'test-1-autoplot.R:72:3',
'test-1-autoplot.R:98:3', 'test-1-autoplot.R:130:3',
'test-1-autoplot.R:157:3', 'test-1-autoplot.R:189:3',
'test-1-autoplot.R:224:3', 'test-1-autoplot.R:257:3',
'test-1-autoplot.R:268:3', 'test-1-autoplot.R:315:3',
'test-1-autoplot.R:343:3', 'test-1-autoplot.R:377:3',
'test-2-autoplot.R:129:3', 'test-2-autoplot.R:182:3',
'test-2-autoplot.R:204:3', 'test-2-autoplot.R:246:3',
'test-2-autoplot.R:300:3', 'test-autoplot_buffer.R:19:3'
• On Linux (2): 'test-2-autoplot.R:8:3', 'test-2-autoplot.R:54:3'
• empty test (1): 'test-helper-DataBackend.R:1:1'
• raster cannot be loaded (1): 'test-mlr3pipelines-graph-integration.R:4:3'
• skmeans cannot be loaded (1): 'test-mlr_sptcv_generic.R:70:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-ResamplingRepeatedSpCVKnndm.R:21:3'): folds can be printed ─────
Error in `CAST::knndm(tpoints = points, modeldomain = self$param_set$values$modeldomain,
ppoints = self$param_set$values$ppoints, k = self$param_set$values$folds,
maxp = self$param_set$values$maxp, clustering = self$param_set$values$clustering,
linkf = self$param_set$values$linkf, samplesize = self$param_set$values$samplesize,
sampling = self$param_set$values$sampling)`: unused argument (ppoints = self$param_set$values$ppoints)
Backtrace:
▆
1. ├─base::suppressMessages(suppressWarnings(rsp$instantiate(task))) at test-ResamplingRepeatedSpCVKnndm.R:21:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::suppressWarnings(rsp$instantiate(task))
4. │ └─base::withCallingHandlers(...)
5. └─rsp$instantiate(task)
6. └─mlr3spatiotempcv:::.__ResamplingRepeatedSpCVKnndm__instantiate(...)
7. └─private$.sample(task$row_ids, task$coordinates(), task$crs)
8. └─mlr3spatiotempcv:::.__ResamplingRepeatedSpCVKnndm__.sample(...)
9. └─mlr3misc::map(...)
10. └─base::lapply(.x, .f, ...)
11. └─mlr3spatiotempcv (local) FUN(X[[i]], ...)
── Error ('test-ResamplingRepeatedSpCVKnndm.R:31:3'): reps can be printed ──────
Error in `CAST::knndm(tpoints = points, modeldomain = self$param_set$values$modeldomain,
ppoints = self$param_set$values$ppoints, k = self$param_set$values$folds,
maxp = self$param_set$values$maxp, clustering = self$param_set$values$clustering,
linkf = self$param_set$values$linkf, samplesize = self$param_set$values$samplesize,
sampling = self$param_set$values$sampling)`: unused argument (ppoints = self$param_set$values$ppoints)
Backtrace:
▆
1. ├─base::suppressMessages(suppressWarnings(rsp$instantiate(task))) at test-ResamplingRepeatedSpCVKnndm.R:31:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::suppressWarnings(rsp$instantiate(task))
4. │ └─base::withCallingHandlers(...)
5. └─rsp$instantiate(task)
6. └─mlr3spatiotempcv:::.__ResamplingRepeatedSpCVKnndm__instantiate(...)
7. └─private$.sample(task$row_ids, task$coordinates(), task$crs)
8. └─mlr3spatiotempcv:::.__ResamplingRepeatedSpCVKnndm__.sample(...)
9. └─mlr3misc::map(...)
10. └─base::lapply(.x, .f, ...)
11. └─mlr3spatiotempcv (local) FUN(X[[i]], ...)
── Error ('test-ResamplingRepeatedSpCVKnndm.R:41:3'): resampling iterations equals folds * repeats ──
Error in `CAST::knndm(tpoints = points, modeldomain = self$param_set$values$modeldomain,
ppoints = self$param_set$values$ppoints, k = self$param_set$values$folds,
maxp = self$param_set$values$maxp, clustering = self$param_set$values$clustering,
linkf = self$param_set$values$linkf, samplesize = self$param_set$values$samplesize,
sampling = self$param_set$values$sampling)`: unused argument (ppoints = self$param_set$values$ppoints)
Backtrace:
▆
1. ├─base::suppressMessages(suppressWarnings(rsp$instantiate(task))) at test-ResamplingRepeatedSpCVKnndm.R:41:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::suppressWarnings(rsp$instantiate(task))
4. │ └─base::withCallingHandlers(...)
5. └─rsp$instantiate(task)
6. └─mlr3spatiotempcv:::.__ResamplingRepeatedSpCVKnndm__instantiate(...)
7. └─private$.sample(task$row_ids, task$coordinates(), task$crs)
8. └─mlr3spatiotempcv:::.__ResamplingRepeatedSpCVKnndm__.sample(...)
9. └─mlr3misc::map(...)
10. └─base::lapply(.x, .f, ...)
11. └─mlr3spatiotempcv (local) FUN(X[[i]], ...)
── Error ('test-2-autoplot.R:331:3'): plot() works for 'spcv_knndm' ────────────
Error in `CAST::knndm(tpoints = points, modeldomain = self$param_set$values$modeldomain,
ppoints = self$param_set$values$ppoints, k = self$param_set$values$folds,
maxp = self$param_set$values$maxp, clustering = self$param_set$values$clustering,
linkf = self$param_set$values$linkf, samplesize = self$param_set$values$samplesize,
sampling = self$param_set$values$sampling)`: unused argument (ppoints = self$param_set$values$ppoints)
Backtrace:
▆
1. ├─base::suppressMessages(suppressWarnings(rsp$instantiate(task))) at test-2-autoplot.R:331:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::suppressWarnings(rsp$instantiate(task))
4. │ └─base::withCallingHandlers(...)
5. └─rsp$instantiate(task)
6. └─mlr3spatiotempcv:::.__ResamplingRepeatedSpCVKnndm__instantiate(...)
7. └─private$.sample(task$row_ids, task$coordinates(), task$crs)
8. └─mlr3spatiotempcv:::.__ResamplingRepeatedSpCVKnndm__.sample(...)
9. └─mlr3misc::map(...)
10. └─base::lapply(.x, .f, ...)
11. └─mlr3spatiotempcv (local) FUN(X[[i]], ...)
── Error ('test-ResamplingSpCVKnndm.R:10:3'): mlr3spatiotempcv indices are the same as CAST knndm: modeldomain ──
Error in `CAST::knndm(tpoints = points, modeldomain = self$param_set$values$modeldomain,
ppoints = self$param_set$values$ppoints, k = self$param_set$values$folds,
maxp = self$param_set$values$maxp, clustering = self$param_set$values$clustering,
linkf = self$param_set$values$linkf, samplesize = self$param_set$values$samplesize,
sampling = self$param_set$values$sampling)`: unused argument (ppoints = self$param_set$values$ppoints)
Backtrace:
▆
1. ├─base::suppressMessages(suppressWarnings(rsmp$instantiate(task))) at test-ResamplingSpCVKnndm.R:10:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::suppressWarnings(rsmp$instantiate(task))
4. │ └─base::withCallingHandlers(...)
5. └─rsmp$instantiate(task)
6. └─mlr3spatiotempcv:::.__ResamplingSpCVKnndm__instantiate(...)
7. └─private$.sample(task$row_ids, task$coordinates(), task$crs)
8. └─mlr3spatiotempcv:::.__ResamplingSpCVKnndm__.sample(...)
── Error ('test-ResamplingSpCVKnndm.R:38:3'): mlr3spatiotempcv indices are the same as CAST knndm: ppoints ──
Error in `CAST::knndm(tpoints = points, modeldomain = self$param_set$values$modeldomain,
ppoints = self$param_set$values$ppoints, k = self$param_set$values$folds,
maxp = self$param_set$values$maxp, clustering = self$param_set$values$clustering,
linkf = self$param_set$values$linkf, samplesize = self$param_set$values$samplesize,
sampling = self$param_set$values$sampling)`: unused argument (ppoints = self$param_set$values$ppoints)
Backtrace:
▆
1. ├─base::suppressMessages(suppressWarnings(rsmp$instantiate(task))) at test-ResamplingSpCVKnndm.R:38:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::suppressWarnings(rsmp$instantiate(task))
4. │ └─base::withCallingHandlers(...)
5. └─rsmp$instantiate(task)
6. └─mlr3spatiotempcv:::.__ResamplingSpCVKnndm__instantiate(...)
7. └─private$.sample(task$row_ids, task$coordinates(), task$crs)
8. └─mlr3spatiotempcv:::.__ResamplingSpCVKnndm__.sample(...)
[ FAIL 6 | WARN 0 | SKIP 23 | PASS 1197 ]
Deleting unused snapshots:
• 1-autoplot/autoplot-show-blocks-true-show-labels-true.svg
• 1-autoplot/custom-cv-fold-1-2-sample-fold-n.svg
• 1-autoplot/custom-cv-fold-1-2.svg
• 1-autoplot/custom-cv-fold-1-sample-fold-n.svg
• 1-autoplot/custom-cv-fold-1.svg
• 1-autoplot/custom-cv-sample-fold-n.svg
• 1-autoplot/cv-fold-1-2-groups-col-role.svg
• 1-autoplot/cv-fold-1-2-sample-fold-n.svg
• 1-autoplot/cv-fold-1-2.svg
• 1-autoplot/cv-fold-1-groups-col-role.svg
• 1-autoplot/cv-fold-1-sample-fold-n.svg
• 1-autoplot/cv-fold-1.svg
• 1-autoplot/cv-sample-fold-n.svg
• 1-autoplot/repcv-fold-1-2-rep-1.svg
• 1-autoplot/repcv-fold-1-2-rep-2.svg
• 1-autoplot/repcv-fold-1-rep-1.svg
• 1-autoplot/repcv-fold-1-rep-2.svg
• 1-autoplot/repspcvblock-fold-1-2-rep-1.svg
• 1-autoplot/repspcvblock-fold-1-2-rep-2.svg
• 1-autoplot/repspcvblock-fold-1-rep-1.svg
• 1-autoplot/repspcvblock-fold-1-rep-2.svg
• 1-autoplot/repspcvcoords-fold-1-2-rep-1.svg
• 1-autoplot/repspcvcoords-fold-1-2-rep-2.svg
• 1-autoplot/repspcvcoords-fold-1-2-sample-fold-n.svg
• 1-autoplot/repspcvcoords-fold-1-rep-1.svg
• 1-autoplot/repspcvcoords-fold-1-rep-2.svg
• 1-autoplot/repspcvcoords-fold-1-sample-fold-n.svg
• 1-autoplot/repspcvcoords-sample-fold-n.svg
• 1-autoplot/repspcvenv-fold-1-2-rep-1.svg
• 1-autoplot/repspcvenv-fold-1-2-rep-2.svg
• 1-autoplot/repspcvenv-fold-1-rep-1.svg
• 1-autoplot/repspcvenv-fold-1-rep-2.svg
• 1-autoplot/spcvblock-fold-1-2-sample-fold-n.svg
• 1-autoplot/spcvblock-fold-1-2.svg
• 1-autoplot/spcvblock-fold-1-sample-fold-n.svg
• 1-autoplot/spcvblock-fold-1.svg
• 1-autoplot/spcvblock-sample-fold-n.svg
• 1-autoplot/spcvcoords-fold-1-2.svg
• 1-autoplot/spcvcoords-fold-1.svg
• 1-autoplot/spcvenv-fold-1-2-sample-fold-n.svg
• 1-autoplot/spcvenv-fold-1-2.svg
• 1-autoplot/spcvenv-fold-1-sample-fold-n.svg
• 1-autoplot/spcvenv-fold-1.svg
• 1-autoplot/spcvenv-sample-fold-n.svg
• 2-autoplot/repspcvdisc-fold-1-2-rep-2.svg
• 2-autoplot/repspcvdisc-fold-1-2-sample-fold-n.svg
• 2-autoplot/repspcvdisc-fold-1-rep-1-sample-n-fold.svg
• 2-autoplot/repspcvdisc-fold-1-rep-2.svg
• 2-autoplot/repspcvdisc-fold-1-sample-fold-n.svg
• 2-autoplot/repspcvdisc-sample-fold-n.svg
• 2-autoplot/repspcvknndm-fold-1-2-rep-2.svg
• 2-autoplot/repspcvknndm-fold-1-2-sample-fold-n.svg
• 2-autoplot/repspcvknndm-fold-1-rep-1-sample-n-fold.svg
• 2-autoplot/repspcvknndm-fold-1-rep-2.svg
• 2-autoplot/repspcvknndm-fold-1-sample-fold-n.svg
• 2-autoplot/repspcvknndm-sample-fold-n.svg
• 2-autoplot/repspcvtiles-fold-1-2-rep-2.svg
• 2-autoplot/repspcvtiles-fold-1-2-sample-fold-n.svg
• 2-autoplot/repspcvtiles-fold-1-2.svg
• 2-autoplot/repspcvtiles-fold-1-rep-2.svg
• 2-autoplot/repspcvtiles-fold-1-sample-fold-n.svg
• 2-autoplot/repspcvtiles-fold-1.svg
• 2-autoplot/repspcvtiles-sample-fold-n.svg
• 2-autoplot/repspcvtiles-show-omitted.svg
• 2-autoplot/repsptcvcstf-2d-space-var-fold-1-2-rep-2.svg
• 2-autoplot/repsptcvcstf-2d-space-var-fold-1-rep-2.svg
• 2-autoplot/repsptcvcstf-fold-1-2-rep-1.svg
• 2-autoplot/repsptcvcstf-fold-1-2-rep-2.svg
• 2-autoplot/repsptcvcstf-fold-1-rep-1-sample-fold-n.svg
• 2-autoplot/repsptcvcstf-fold-1-rep-2.svg
• 2-autoplot/spcvdisc-fold-1-2.svg
• 2-autoplot/spcvdisc-fold-1.svg
• 2-autoplot/spcvdisc-show-omitted.svg
• 2-autoplot/spcvknndm-all-test-sets.svg
• 2-autoplot/spcvknndm-fold-1-2.svg
• 2-autoplot/spcvknndm-fold-1.svg
• 2-autoplot/sptcvcstf-2d-space-var-all-test-sets.svg
• 2-autoplot/sptcvcstf-2d-space-var-fold-1-2.svg
• 2-autoplot/sptcvcstf-2d-space-var-fold-1.svg
• 2-autoplot/sptcvcstf-2d-time-var-all-test-sets.svg
• 2-autoplot/sptcvcstf-2d-time-var-fold-1-2-rep-2.svg
• 2-autoplot/sptcvcstf-2d-time-var-fold-1-2-sample-fold-n.svg
• 2-autoplot/sptcvcstf-2d-time-var-fold-1-2.svg
• 2-autoplot/sptcvcstf-2d-time-var-fold-1-rep-2.svg
• 2-autoplot/sptcvcstf-2d-time-var-fold-1-sample-fold-n.svg
• 2-autoplot/sptcvcstf-2d-time-var-fold-1.svg
• 2-autoplot/sptcvcstf-2d-time-var-sample-fold-n.svg
• 2-autoplot/sptcvcstf-3d-time-var-fold-1-2-sample-fold-n.svg
• 2-autoplot/sptcvcstf-3d-time-var-fold-1-2.svg
• 2-autoplot/sptcvcstf-3d-time-var-fold-1-sample-fold-n.svg
• autoplot_buffer/spcvbuffer-fold-1-2.svg
Error: Test failures
Execution halted
Flavor: r-patched-linux-x86_64
Version: 2.3.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [129s/98s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3spatiotempcv")
+ test_check("mlr3spatiotempcv")
+ }
Loading required package: mlr3
Starting 2 test processes
[ FAIL 6 | WARN 0 | SKIP 23 | PASS 1197 ]
══ Skipped tests (23) ══════════════════════════════════════════════════════════
• On CRAN (18): 'test-1-autoplot.R:40:3', 'test-1-autoplot.R:72:3',
'test-1-autoplot.R:98:3', 'test-1-autoplot.R:130:3',
'test-1-autoplot.R:157:3', 'test-1-autoplot.R:189:3',
'test-1-autoplot.R:224:3', 'test-1-autoplot.R:257:3',
'test-1-autoplot.R:268:3', 'test-1-autoplot.R:315:3',
'test-1-autoplot.R:343:3', 'test-1-autoplot.R:377:3',
'test-2-autoplot.R:129:3', 'test-2-autoplot.R:182:3',
'test-2-autoplot.R:204:3', 'test-2-autoplot.R:246:3',
'test-2-autoplot.R:300:3', 'test-autoplot_buffer.R:19:3'
• On Linux (2): 'test-2-autoplot.R:8:3', 'test-2-autoplot.R:54:3'
• empty test (1): 'test-helper-DataBackend.R:1:1'
• raster cannot be loaded (1): 'test-mlr3pipelines-graph-integration.R:4:3'
• skmeans cannot be loaded (1): 'test-mlr_sptcv_generic.R:70:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-ResamplingRepeatedSpCVKnndm.R:21:3'): folds can be printed ─────
Error in `CAST::knndm(tpoints = points, modeldomain = self$param_set$values$modeldomain,
ppoints = self$param_set$values$ppoints, k = self$param_set$values$folds,
maxp = self$param_set$values$maxp, clustering = self$param_set$values$clustering,
linkf = self$param_set$values$linkf, samplesize = self$param_set$values$samplesize,
sampling = self$param_set$values$sampling)`: unused argument (ppoints = self$param_set$values$ppoints)
Backtrace:
▆
1. ├─base::suppressMessages(suppressWarnings(rsp$instantiate(task))) at test-ResamplingRepeatedSpCVKnndm.R:21:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::suppressWarnings(rsp$instantiate(task))
4. │ └─base::withCallingHandlers(...)
5. └─rsp$instantiate(task)
6. └─mlr3spatiotempcv:::.__ResamplingRepeatedSpCVKnndm__instantiate(...)
7. └─private$.sample(task$row_ids, task$coordinates(), task$crs)
8. └─mlr3spatiotempcv:::.__ResamplingRepeatedSpCVKnndm__.sample(...)
9. └─mlr3misc::map(...)
10. └─base::lapply(.x, .f, ...)
11. └─mlr3spatiotempcv (local) FUN(X[[i]], ...)
── Error ('test-ResamplingRepeatedSpCVKnndm.R:31:3'): reps can be printed ──────
Error in `CAST::knndm(tpoints = points, modeldomain = self$param_set$values$modeldomain,
ppoints = self$param_set$values$ppoints, k = self$param_set$values$folds,
maxp = self$param_set$values$maxp, clustering = self$param_set$values$clustering,
linkf = self$param_set$values$linkf, samplesize = self$param_set$values$samplesize,
sampling = self$param_set$values$sampling)`: unused argument (ppoints = self$param_set$values$ppoints)
Backtrace:
▆
1. ├─base::suppressMessages(suppressWarnings(rsp$instantiate(task))) at test-ResamplingRepeatedSpCVKnndm.R:31:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::suppressWarnings(rsp$instantiate(task))
4. │ └─base::withCallingHandlers(...)
5. └─rsp$instantiate(task)
6. └─mlr3spatiotempcv:::.__ResamplingRepeatedSpCVKnndm__instantiate(...)
7. └─private$.sample(task$row_ids, task$coordinates(), task$crs)
8. └─mlr3spatiotempcv:::.__ResamplingRepeatedSpCVKnndm__.sample(...)
9. └─mlr3misc::map(...)
10. └─base::lapply(.x, .f, ...)
11. └─mlr3spatiotempcv (local) FUN(X[[i]], ...)
── Error ('test-ResamplingRepeatedSpCVKnndm.R:41:3'): resampling iterations equals folds * repeats ──
Error in `CAST::knndm(tpoints = points, modeldomain = self$param_set$values$modeldomain,
ppoints = self$param_set$values$ppoints, k = self$param_set$values$folds,
maxp = self$param_set$values$maxp, clustering = self$param_set$values$clustering,
linkf = self$param_set$values$linkf, samplesize = self$param_set$values$samplesize,
sampling = self$param_set$values$sampling)`: unused argument (ppoints = self$param_set$values$ppoints)
Backtrace:
▆
1. ├─base::suppressMessages(suppressWarnings(rsp$instantiate(task))) at test-ResamplingRepeatedSpCVKnndm.R:41:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::suppressWarnings(rsp$instantiate(task))
4. │ └─base::withCallingHandlers(...)
5. └─rsp$instantiate(task)
6. └─mlr3spatiotempcv:::.__ResamplingRepeatedSpCVKnndm__instantiate(...)
7. └─private$.sample(task$row_ids, task$coordinates(), task$crs)
8. └─mlr3spatiotempcv:::.__ResamplingRepeatedSpCVKnndm__.sample(...)
9. └─mlr3misc::map(...)
10. └─base::lapply(.x, .f, ...)
11. └─mlr3spatiotempcv (local) FUN(X[[i]], ...)
── Error ('test-2-autoplot.R:331:3'): plot() works for 'spcv_knndm' ────────────
Error in `CAST::knndm(tpoints = points, modeldomain = self$param_set$values$modeldomain,
ppoints = self$param_set$values$ppoints, k = self$param_set$values$folds,
maxp = self$param_set$values$maxp, clustering = self$param_set$values$clustering,
linkf = self$param_set$values$linkf, samplesize = self$param_set$values$samplesize,
sampling = self$param_set$values$sampling)`: unused argument (ppoints = self$param_set$values$ppoints)
Backtrace:
▆
1. ├─base::suppressMessages(suppressWarnings(rsp$instantiate(task))) at test-2-autoplot.R:331:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::suppressWarnings(rsp$instantiate(task))
4. │ └─base::withCallingHandlers(...)
5. └─rsp$instantiate(task)
6. └─mlr3spatiotempcv:::.__ResamplingRepeatedSpCVKnndm__instantiate(...)
7. └─private$.sample(task$row_ids, task$coordinates(), task$crs)
8. └─mlr3spatiotempcv:::.__ResamplingRepeatedSpCVKnndm__.sample(...)
9. └─mlr3misc::map(...)
10. └─base::lapply(.x, .f, ...)
11. └─mlr3spatiotempcv (local) FUN(X[[i]], ...)
── Error ('test-ResamplingSpCVKnndm.R:10:3'): mlr3spatiotempcv indices are the same as CAST knndm: modeldomain ──
Error in `CAST::knndm(tpoints = points, modeldomain = self$param_set$values$modeldomain,
ppoints = self$param_set$values$ppoints, k = self$param_set$values$folds,
maxp = self$param_set$values$maxp, clustering = self$param_set$values$clustering,
linkf = self$param_set$values$linkf, samplesize = self$param_set$values$samplesize,
sampling = self$param_set$values$sampling)`: unused argument (ppoints = self$param_set$values$ppoints)
Backtrace:
▆
1. ├─base::suppressMessages(suppressWarnings(rsmp$instantiate(task))) at test-ResamplingSpCVKnndm.R:10:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::suppressWarnings(rsmp$instantiate(task))
4. │ └─base::withCallingHandlers(...)
5. └─rsmp$instantiate(task)
6. └─mlr3spatiotempcv:::.__ResamplingSpCVKnndm__instantiate(...)
7. └─private$.sample(task$row_ids, task$coordinates(), task$crs)
8. └─mlr3spatiotempcv:::.__ResamplingSpCVKnndm__.sample(...)
── Error ('test-ResamplingSpCVKnndm.R:38:3'): mlr3spatiotempcv indices are the same as CAST knndm: ppoints ──
Error in `CAST::knndm(tpoints = points, modeldomain = self$param_set$values$modeldomain,
ppoints = self$param_set$values$ppoints, k = self$param_set$values$folds,
maxp = self$param_set$values$maxp, clustering = self$param_set$values$clustering,
linkf = self$param_set$values$linkf, samplesize = self$param_set$values$samplesize,
sampling = self$param_set$values$sampling)`: unused argument (ppoints = self$param_set$values$ppoints)
Backtrace:
▆
1. ├─base::suppressMessages(suppressWarnings(rsmp$instantiate(task))) at test-ResamplingSpCVKnndm.R:38:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::suppressWarnings(rsmp$instantiate(task))
4. │ └─base::withCallingHandlers(...)
5. └─rsmp$instantiate(task)
6. └─mlr3spatiotempcv:::.__ResamplingSpCVKnndm__instantiate(...)
7. └─private$.sample(task$row_ids, task$coordinates(), task$crs)
8. └─mlr3spatiotempcv:::.__ResamplingSpCVKnndm__.sample(...)
[ FAIL 6 | WARN 0 | SKIP 23 | PASS 1197 ]
Deleting unused snapshots:
• 1-autoplot/autoplot-show-blocks-true-show-labels-true.svg
• 1-autoplot/custom-cv-fold-1-2-sample-fold-n.svg
• 1-autoplot/custom-cv-fold-1-2.svg
• 1-autoplot/custom-cv-fold-1-sample-fold-n.svg
• 1-autoplot/custom-cv-fold-1.svg
• 1-autoplot/custom-cv-sample-fold-n.svg
• 1-autoplot/cv-fold-1-2-groups-col-role.svg
• 1-autoplot/cv-fold-1-2-sample-fold-n.svg
• 1-autoplot/cv-fold-1-2.svg
• 1-autoplot/cv-fold-1-groups-col-role.svg
• 1-autoplot/cv-fold-1-sample-fold-n.svg
• 1-autoplot/cv-fold-1.svg
• 1-autoplot/cv-sample-fold-n.svg
• 1-autoplot/repcv-fold-1-2-rep-1.svg
• 1-autoplot/repcv-fold-1-2-rep-2.svg
• 1-autoplot/repcv-fold-1-rep-1.svg
• 1-autoplot/repcv-fold-1-rep-2.svg
• 1-autoplot/repspcvblock-fold-1-2-rep-1.svg
• 1-autoplot/repspcvblock-fold-1-2-rep-2.svg
• 1-autoplot/repspcvblock-fold-1-rep-1.svg
• 1-autoplot/repspcvblock-fold-1-rep-2.svg
• 1-autoplot/repspcvcoords-fold-1-2-rep-1.svg
• 1-autoplot/repspcvcoords-fold-1-2-rep-2.svg
• 1-autoplot/repspcvcoords-fold-1-2-sample-fold-n.svg
• 1-autoplot/repspcvcoords-fold-1-rep-1.svg
• 1-autoplot/repspcvcoords-fold-1-rep-2.svg
• 1-autoplot/repspcvcoords-fold-1-sample-fold-n.svg
• 1-autoplot/repspcvcoords-sample-fold-n.svg
• 1-autoplot/repspcvenv-fold-1-2-rep-1.svg
• 1-autoplot/repspcvenv-fold-1-2-rep-2.svg
• 1-autoplot/repspcvenv-fold-1-rep-1.svg
• 1-autoplot/repspcvenv-fold-1-rep-2.svg
• 1-autoplot/spcvblock-fold-1-2-sample-fold-n.svg
• 1-autoplot/spcvblock-fold-1-2.svg
• 1-autoplot/spcvblock-fold-1-sample-fold-n.svg
• 1-autoplot/spcvblock-fold-1.svg
• 1-autoplot/spcvblock-sample-fold-n.svg
• 1-autoplot/spcvcoords-fold-1-2.svg
• 1-autoplot/spcvcoords-fold-1.svg
• 1-autoplot/spcvenv-fold-1-2-sample-fold-n.svg
• 1-autoplot/spcvenv-fold-1-2.svg
• 1-autoplot/spcvenv-fold-1-sample-fold-n.svg
• 1-autoplot/spcvenv-fold-1.svg
• 1-autoplot/spcvenv-sample-fold-n.svg
• 2-autoplot/repspcvdisc-fold-1-2-rep-2.svg
• 2-autoplot/repspcvdisc-fold-1-2-sample-fold-n.svg
• 2-autoplot/repspcvdisc-fold-1-rep-1-sample-n-fold.svg
• 2-autoplot/repspcvdisc-fold-1-rep-2.svg
• 2-autoplot/repspcvdisc-fold-1-sample-fold-n.svg
• 2-autoplot/repspcvdisc-sample-fold-n.svg
• 2-autoplot/repspcvknndm-fold-1-2-rep-2.svg
• 2-autoplot/repspcvknndm-fold-1-2-sample-fold-n.svg
• 2-autoplot/repspcvknndm-fold-1-rep-1-sample-n-fold.svg
• 2-autoplot/repspcvknndm-fold-1-rep-2.svg
• 2-autoplot/repspcvknndm-fold-1-sample-fold-n.svg
• 2-autoplot/repspcvknndm-sample-fold-n.svg
• 2-autoplot/repspcvtiles-fold-1-2-rep-2.svg
• 2-autoplot/repspcvtiles-fold-1-2-sample-fold-n.svg
• 2-autoplot/repspcvtiles-fold-1-2.svg
• 2-autoplot/repspcvtiles-fold-1-rep-2.svg
• 2-autoplot/repspcvtiles-fold-1-sample-fold-n.svg
• 2-autoplot/repspcvtiles-fold-1.svg
• 2-autoplot/repspcvtiles-sample-fold-n.svg
• 2-autoplot/repspcvtiles-show-omitted.svg
• 2-autoplot/repsptcvcstf-2d-space-var-fold-1-2-rep-2.svg
• 2-autoplot/repsptcvcstf-2d-space-var-fold-1-rep-2.svg
• 2-autoplot/repsptcvcstf-fold-1-2-rep-1.svg
• 2-autoplot/repsptcvcstf-fold-1-2-rep-2.svg
• 2-autoplot/repsptcvcstf-fold-1-rep-1-sample-fold-n.svg
• 2-autoplot/repsptcvcstf-fold-1-rep-2.svg
• 2-autoplot/spcvdisc-fold-1-2.svg
• 2-autoplot/spcvdisc-fold-1.svg
• 2-autoplot/spcvdisc-show-omitted.svg
• 2-autoplot/spcvknndm-all-test-sets.svg
• 2-autoplot/spcvknndm-fold-1-2.svg
• 2-autoplot/spcvknndm-fold-1.svg
• 2-autoplot/sptcvcstf-2d-space-var-all-test-sets.svg
• 2-autoplot/sptcvcstf-2d-space-var-fold-1-2.svg
• 2-autoplot/sptcvcstf-2d-space-var-fold-1.svg
• 2-autoplot/sptcvcstf-2d-time-var-all-test-sets.svg
• 2-autoplot/sptcvcstf-2d-time-var-fold-1-2-rep-2.svg
• 2-autoplot/sptcvcstf-2d-time-var-fold-1-2-sample-fold-n.svg
• 2-autoplot/sptcvcstf-2d-time-var-fold-1-2.svg
• 2-autoplot/sptcvcstf-2d-time-var-fold-1-rep-2.svg
• 2-autoplot/sptcvcstf-2d-time-var-fold-1-sample-fold-n.svg
• 2-autoplot/sptcvcstf-2d-time-var-fold-1.svg
• 2-autoplot/sptcvcstf-2d-time-var-sample-fold-n.svg
• 2-autoplot/sptcvcstf-3d-time-var-fold-1-2-sample-fold-n.svg
• 2-autoplot/sptcvcstf-3d-time-var-fold-1-2.svg
• 2-autoplot/sptcvcstf-3d-time-var-fold-1-sample-fold-n.svg
• autoplot_buffer/spcvbuffer-fold-1-2.svg
Error: Test failures
Execution halted
Flavor: r-release-linux-x86_64
Version: 2.3.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [46s/35s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
• 2-autoplot/sptcvcstf-2d-space-var-fold-1-2.svg
• 2-autoplot/sptcvcstf-2d-space-var-fold-1.svg
• 2-autoplot/sptcvcstf-2d-time-var-fold-1-2-rep-2.svg
• 2-autoplot/sptcvcstf-2d-time-var-fold-1-2-sample-fold-n.svg
• 2-autoplot/sptcvcstf-2d-time-var-fold-1-2.svg
• 2-autoplot/sptcvcstf-2d-time-var-fold-1-rep-2.svg
• 2-autoplot/sptcvcstf-2d-time-var-fold-1-sample-fold-n.svg
• 2-autoplot/sptcvcstf-2d-time-var-fold-1.svg
• 2-autoplot/sptcvcstf-2d-time-var-sample-fold-n.svg
• 2-autoplot/sptcvcstf-3d-time-var-fold-1-2-sample-fold-n.svg
• 2-autoplot/sptcvcstf-3d-time-var-fold-1-2.svg
• 2-autoplot/sptcvcstf-3d-time-var-fold-1-sample-fold-n.svg
• autoplot_buffer/spcvbuffer-fold-1-2.svg
Error: Test failures
Execution halted
Flavor: r-release-macos-arm64
Version: 2.3.0
Check: tests
Result: ERROR
Running 'testthat.R' [70s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3spatiotempcv")
+ test_check("mlr3spatiotempcv")
+ }
Loading required package: mlr3
Starting 2 test processes
[ FAIL 6 | WARN 0 | SKIP 23 | PASS 1197 ]
══ Skipped tests (23) ══════════════════════════════════════════════════════════
• On CRAN (18): 'test-1-autoplot.R:40:3', 'test-1-autoplot.R:72:3',
'test-1-autoplot.R:98:3', 'test-1-autoplot.R:130:3',
'test-1-autoplot.R:157:3', 'test-1-autoplot.R:189:3',
'test-1-autoplot.R:224:3', 'test-1-autoplot.R:257:3',
'test-1-autoplot.R:268:3', 'test-1-autoplot.R:315:3',
'test-1-autoplot.R:343:3', 'test-1-autoplot.R:377:3',
'test-2-autoplot.R:129:3', 'test-2-autoplot.R:182:3',
'test-2-autoplot.R:204:3', 'test-2-autoplot.R:246:3',
'test-2-autoplot.R:300:3', 'test-autoplot_buffer.R:19:3'
• On Windows (2): 'test-2-autoplot.R:9:3', 'test-2-autoplot.R:55:3'
• empty test (1): 'test-helper-DataBackend.R:1:1'
• raster cannot be loaded (1): 'test-mlr3pipelines-graph-integration.R:4:3'
• skmeans cannot be loaded (1): 'test-mlr_sptcv_generic.R:70:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-ResamplingRepeatedSpCVKnndm.R:21:3'): folds can be printed ─────
Error in `CAST::knndm(tpoints = points, modeldomain = self$param_set$values$modeldomain,
ppoints = self$param_set$values$ppoints, k = self$param_set$values$folds,
maxp = self$param_set$values$maxp, clustering = self$param_set$values$clustering,
linkf = self$param_set$values$linkf, samplesize = self$param_set$values$samplesize,
sampling = self$param_set$values$sampling)`: unused argument (ppoints = self$param_set$values$ppoints)
Backtrace:
▆
1. ├─base::suppressMessages(suppressWarnings(rsp$instantiate(task))) at test-ResamplingRepeatedSpCVKnndm.R:21:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::suppressWarnings(rsp$instantiate(task))
4. │ └─base::withCallingHandlers(...)
5. └─rsp$instantiate(task)
6. └─mlr3spatiotempcv:::.__ResamplingRepeatedSpCVKnndm__instantiate(...)
7. └─private$.sample(task$row_ids, task$coordinates(), task$crs)
8. └─mlr3spatiotempcv:::.__ResamplingRepeatedSpCVKnndm__.sample(...)
9. └─mlr3misc::map(...)
10. └─base::lapply(.x, .f, ...)
11. └─mlr3spatiotempcv (local) FUN(X[[i]], ...)
── Error ('test-ResamplingRepeatedSpCVKnndm.R:31:3'): reps can be printed ──────
Error in `CAST::knndm(tpoints = points, modeldomain = self$param_set$values$modeldomain,
ppoints = self$param_set$values$ppoints, k = self$param_set$values$folds,
maxp = self$param_set$values$maxp, clustering = self$param_set$values$clustering,
linkf = self$param_set$values$linkf, samplesize = self$param_set$values$samplesize,
sampling = self$param_set$values$sampling)`: unused argument (ppoints = self$param_set$values$ppoints)
Backtrace:
▆
1. ├─base::suppressMessages(suppressWarnings(rsp$instantiate(task))) at test-ResamplingRepeatedSpCVKnndm.R:31:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::suppressWarnings(rsp$instantiate(task))
4. │ └─base::withCallingHandlers(...)
5. └─rsp$instantiate(task)
6. └─mlr3spatiotempcv:::.__ResamplingRepeatedSpCVKnndm__instantiate(...)
7. └─private$.sample(task$row_ids, task$coordinates(), task$crs)
8. └─mlr3spatiotempcv:::.__ResamplingRepeatedSpCVKnndm__.sample(...)
9. └─mlr3misc::map(...)
10. └─base::lapply(.x, .f, ...)
11. └─mlr3spatiotempcv (local) FUN(X[[i]], ...)
── Error ('test-ResamplingRepeatedSpCVKnndm.R:41:3'): resampling iterations equals folds * repeats ──
Error in `CAST::knndm(tpoints = points, modeldomain = self$param_set$values$modeldomain,
ppoints = self$param_set$values$ppoints, k = self$param_set$values$folds,
maxp = self$param_set$values$maxp, clustering = self$param_set$values$clustering,
linkf = self$param_set$values$linkf, samplesize = self$param_set$values$samplesize,
sampling = self$param_set$values$sampling)`: unused argument (ppoints = self$param_set$values$ppoints)
Backtrace:
▆
1. ├─base::suppressMessages(suppressWarnings(rsp$instantiate(task))) at test-ResamplingRepeatedSpCVKnndm.R:41:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::suppressWarnings(rsp$instantiate(task))
4. │ └─base::withCallingHandlers(...)
5. └─rsp$instantiate(task)
6. └─mlr3spatiotempcv:::.__ResamplingRepeatedSpCVKnndm__instantiate(...)
7. └─private$.sample(task$row_ids, task$coordinates(), task$crs)
8. └─mlr3spatiotempcv:::.__ResamplingRepeatedSpCVKnndm__.sample(...)
9. └─mlr3misc::map(...)
10. └─base::lapply(.x, .f, ...)
11. └─mlr3spatiotempcv (local) FUN(X[[i]], ...)
── Error ('test-2-autoplot.R:331:3'): plot() works for 'spcv_knndm' ────────────
Error in `CAST::knndm(tpoints = points, modeldomain = self$param_set$values$modeldomain,
ppoints = self$param_set$values$ppoints, k = self$param_set$values$folds,
maxp = self$param_set$values$maxp, clustering = self$param_set$values$clustering,
linkf = self$param_set$values$linkf, samplesize = self$param_set$values$samplesize,
sampling = self$param_set$values$sampling)`: unused argument (ppoints = self$param_set$values$ppoints)
Backtrace:
▆
1. ├─base::suppressMessages(suppressWarnings(rsp$instantiate(task))) at test-2-autoplot.R:331:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::suppressWarnings(rsp$instantiate(task))
4. │ └─base::withCallingHandlers(...)
5. └─rsp$instantiate(task)
6. └─mlr3spatiotempcv:::.__ResamplingRepeatedSpCVKnndm__instantiate(...)
7. └─private$.sample(task$row_ids, task$coordinates(), task$crs)
8. └─mlr3spatiotempcv:::.__ResamplingRepeatedSpCVKnndm__.sample(...)
9. └─mlr3misc::map(...)
10. └─base::lapply(.x, .f, ...)
11. └─mlr3spatiotempcv (local) FUN(X[[i]], ...)
── Error ('test-ResamplingSpCVKnndm.R:10:3'): mlr3spatiotempcv indices are the same as CAST knndm: modeldomain ──
Error in `CAST::knndm(tpoints = points, modeldomain = self$param_set$values$modeldomain,
ppoints = self$param_set$values$ppoints, k = self$param_set$values$folds,
maxp = self$param_set$values$maxp, clustering = self$param_set$values$clustering,
linkf = self$param_set$values$linkf, samplesize = self$param_set$values$samplesize,
sampling = self$param_set$values$sampling)`: unused argument (ppoints = self$param_set$values$ppoints)
Backtrace:
▆
1. ├─base::suppressMessages(suppressWarnings(rsmp$instantiate(task))) at test-ResamplingSpCVKnndm.R:10:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::suppressWarnings(rsmp$instantiate(task))
4. │ └─base::withCallingHandlers(...)
5. └─rsmp$instantiate(task)
6. └─mlr3spatiotempcv:::.__ResamplingSpCVKnndm__instantiate(...)
7. └─private$.sample(task$row_ids, task$coordinates(), task$crs)
8. └─mlr3spatiotempcv:::.__ResamplingSpCVKnndm__.sample(...)
── Error ('test-ResamplingSpCVKnndm.R:38:3'): mlr3spatiotempcv indices are the same as CAST knndm: ppoints ──
Error in `CAST::knndm(tpoints = points, modeldomain = self$param_set$values$modeldomain,
ppoints = self$param_set$values$ppoints, k = self$param_set$values$folds,
maxp = self$param_set$values$maxp, clustering = self$param_set$values$clustering,
linkf = self$param_set$values$linkf, samplesize = self$param_set$values$samplesize,
sampling = self$param_set$values$sampling)`: unused argument (ppoints = self$param_set$values$ppoints)
Backtrace:
▆
1. ├─base::suppressMessages(suppressWarnings(rsmp$instantiate(task))) at test-ResamplingSpCVKnndm.R:38:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::suppressWarnings(rsmp$instantiate(task))
4. │ └─base::withCallingHandlers(...)
5. └─rsmp$instantiate(task)
6. └─mlr3spatiotempcv:::.__ResamplingSpCVKnndm__instantiate(...)
7. └─private$.sample(task$row_ids, task$coordinates(), task$crs)
8. └─mlr3spatiotempcv:::.__ResamplingSpCVKnndm__.sample(...)
[ FAIL 6 | WARN 0 | SKIP 23 | PASS 1197 ]
Deleting unused snapshots:
• 1-autoplot/autoplot-show-blocks-true-show-labels-true.svg
• 1-autoplot/custom-cv-fold-1-2-sample-fold-n.svg
• 1-autoplot/custom-cv-fold-1-2.svg
• 1-autoplot/custom-cv-fold-1-sample-fold-n.svg
• 1-autoplot/custom-cv-fold-1.svg
• 1-autoplot/custom-cv-sample-fold-n.svg
• 1-autoplot/cv-fold-1-2-groups-col-role.svg
• 1-autoplot/cv-fold-1-2-sample-fold-n.svg
• 1-autoplot/cv-fold-1-2.svg
• 1-autoplot/cv-fold-1-groups-col-role.svg
• 1-autoplot/cv-fold-1-sample-fold-n.svg
• 1-autoplot/cv-fold-1.svg
• 1-autoplot/cv-sample-fold-n.svg
• 1-autoplot/repcv-fold-1-2-rep-1.svg
• 1-autoplot/repcv-fold-1-2-rep-2.svg
• 1-autoplot/repcv-fold-1-rep-1.svg
• 1-autoplot/repcv-fold-1-rep-2.svg
• 1-autoplot/repspcvblock-fold-1-2-rep-1.svg
• 1-autoplot/repspcvblock-fold-1-2-rep-2.svg
• 1-autoplot/repspcvblock-fold-1-rep-1.svg
• 1-autoplot/repspcvblock-fold-1-rep-2.svg
• 1-autoplot/repspcvcoords-fold-1-2-rep-1.svg
• 1-autoplot/repspcvcoords-fold-1-2-rep-2.svg
• 1-autoplot/repspcvcoords-fold-1-2-sample-fold-n.svg
• 1-autoplot/repspcvcoords-fold-1-rep-1.svg
• 1-autoplot/repspcvcoords-fold-1-rep-2.svg
• 1-autoplot/repspcvcoords-fold-1-sample-fold-n.svg
• 1-autoplot/repspcvcoords-sample-fold-n.svg
• 1-autoplot/repspcvenv-fold-1-2-rep-1.svg
• 1-autoplot/repspcvenv-fold-1-2-rep-2.svg
• 1-autoplot/repspcvenv-fold-1-rep-1.svg
• 1-autoplot/repspcvenv-fold-1-rep-2.svg
• 1-autoplot/spcvblock-fold-1-2-sample-fold-n.svg
• 1-autoplot/spcvblock-fold-1-2.svg
• 1-autoplot/spcvblock-fold-1-sample-fold-n.svg
• 1-autoplot/spcvblock-fold-1.svg
• 1-autoplot/spcvblock-sample-fold-n.svg
• 1-autoplot/spcvcoords-fold-1-2.svg
• 1-autoplot/spcvcoords-fold-1.svg
• 1-autoplot/spcvenv-fold-1-2-sample-fold-n.svg
• 1-autoplot/spcvenv-fold-1-2.svg
• 1-autoplot/spcvenv-fold-1-sample-fold-n.svg
• 1-autoplot/spcvenv-fold-1.svg
• 1-autoplot/spcvenv-sample-fold-n.svg
• 2-autoplot/repspcvdisc-fold-1-2-rep-2.svg
• 2-autoplot/repspcvdisc-fold-1-2-sample-fold-n.svg
• 2-autoplot/repspcvdisc-fold-1-rep-1-sample-n-fold.svg
• 2-autoplot/repspcvdisc-fold-1-rep-2.svg
• 2-autoplot/repspcvdisc-fold-1-sample-fold-n.svg
• 2-autoplot/repspcvdisc-sample-fold-n.svg
• 2-autoplot/repspcvknndm-fold-1-2-rep-2.svg
• 2-autoplot/repspcvknndm-fold-1-2-sample-fold-n.svg
• 2-autoplot/repspcvknndm-fold-1-rep-1-sample-n-fold.svg
• 2-autoplot/repspcvknndm-fold-1-rep-2.svg
• 2-autoplot/repspcvknndm-fold-1-sample-fold-n.svg
• 2-autoplot/repspcvknndm-sample-fold-n.svg
• 2-autoplot/repspcvtiles-fold-1-2-rep-2.svg
• 2-autoplot/repspcvtiles-fold-1-2-sample-fold-n.svg
• 2-autoplot/repspcvtiles-fold-1-2.svg
• 2-autoplot/repspcvtiles-fold-1-rep-2.svg
• 2-autoplot/repspcvtiles-fold-1-sample-fold-n.svg
• 2-autoplot/repspcvtiles-fold-1.svg
• 2-autoplot/repspcvtiles-sample-fold-n.svg
• 2-autoplot/repspcvtiles-show-omitted.svg
• 2-autoplot/repsptcvcstf-2d-space-var-fold-1-2-rep-2.svg
• 2-autoplot/repsptcvcstf-2d-space-var-fold-1-rep-2.svg
• 2-autoplot/repsptcvcstf-fold-1-2-rep-1.svg
• 2-autoplot/repsptcvcstf-fold-1-2-rep-2.svg
• 2-autoplot/repsptcvcstf-fold-1-rep-1-sample-fold-n.svg
• 2-autoplot/repsptcvcstf-fold-1-rep-2.svg
• 2-autoplot/spcvdisc-fold-1-2.svg
• 2-autoplot/spcvdisc-fold-1.svg
• 2-autoplot/spcvdisc-show-omitted.svg
• 2-autoplot/spcvknndm-all-test-sets.svg
• 2-autoplot/spcvknndm-fold-1-2.svg
• 2-autoplot/spcvknndm-fold-1.svg
• 2-autoplot/sptcvcstf-2d-space-var-all-test-sets.svg
• 2-autoplot/sptcvcstf-2d-space-var-fold-1-2.svg
• 2-autoplot/sptcvcstf-2d-space-var-fold-1.svg
• 2-autoplot/sptcvcstf-2d-time-var-all-test-sets.svg
• 2-autoplot/sptcvcstf-2d-time-var-fold-1-2-rep-2.svg
• 2-autoplot/sptcvcstf-2d-time-var-fold-1-2-sample-fold-n.svg
• 2-autoplot/sptcvcstf-2d-time-var-fold-1-2.svg
• 2-autoplot/sptcvcstf-2d-time-var-fold-1-rep-2.svg
• 2-autoplot/sptcvcstf-2d-time-var-fold-1-sample-fold-n.svg
• 2-autoplot/sptcvcstf-2d-time-var-fold-1.svg
• 2-autoplot/sptcvcstf-2d-time-var-sample-fold-n.svg
• 2-autoplot/sptcvcstf-3d-time-var-fold-1-2-sample-fold-n.svg
• 2-autoplot/sptcvcstf-3d-time-var-fold-1-2.svg
• 2-autoplot/sptcvcstf-3d-time-var-fold-1-sample-fold-n.svg
• autoplot_buffer/spcvbuffer-fold-1-2.svg
Error: Test failures
Execution halted
Flavor: r-release-windows-x86_64
Version: 2.3.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [43s/28s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
• 2-autoplot/sptcvcstf-2d-space-var-fold-1-2.svg
• 2-autoplot/sptcvcstf-2d-space-var-fold-1.svg
• 2-autoplot/sptcvcstf-2d-time-var-fold-1-2-rep-2.svg
• 2-autoplot/sptcvcstf-2d-time-var-fold-1-2-sample-fold-n.svg
• 2-autoplot/sptcvcstf-2d-time-var-fold-1-2.svg
• 2-autoplot/sptcvcstf-2d-time-var-fold-1-rep-2.svg
• 2-autoplot/sptcvcstf-2d-time-var-fold-1-sample-fold-n.svg
• 2-autoplot/sptcvcstf-2d-time-var-fold-1.svg
• 2-autoplot/sptcvcstf-2d-time-var-sample-fold-n.svg
• 2-autoplot/sptcvcstf-3d-time-var-fold-1-2-sample-fold-n.svg
• 2-autoplot/sptcvcstf-3d-time-var-fold-1-2.svg
• 2-autoplot/sptcvcstf-3d-time-var-fold-1-sample-fold-n.svg
• autoplot_buffer/spcvbuffer-fold-1-2.svg
Error: Test failures
Execution halted
Flavor: r-oldrel-macos-arm64
Version: 2.3.0
Check: tests
Result: ERROR
Running 'testthat.R' [64s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3spatiotempcv")
+ test_check("mlr3spatiotempcv")
+ }
Loading required package: mlr3
Starting 2 test processes
[ FAIL 6 | WARN 0 | SKIP 23 | PASS 1197 ]
══ Skipped tests (23) ══════════════════════════════════════════════════════════
• On CRAN (18): 'test-1-autoplot.R:40:3', 'test-1-autoplot.R:72:3',
'test-1-autoplot.R:98:3', 'test-1-autoplot.R:130:3',
'test-1-autoplot.R:157:3', 'test-1-autoplot.R:189:3',
'test-1-autoplot.R:224:3', 'test-1-autoplot.R:257:3',
'test-1-autoplot.R:268:3', 'test-1-autoplot.R:315:3',
'test-1-autoplot.R:343:3', 'test-1-autoplot.R:377:3',
'test-2-autoplot.R:129:3', 'test-2-autoplot.R:182:3',
'test-2-autoplot.R:204:3', 'test-2-autoplot.R:246:3',
'test-2-autoplot.R:300:3', 'test-autoplot_buffer.R:19:3'
• On Windows (2): 'test-2-autoplot.R:9:3', 'test-2-autoplot.R:55:3'
• empty test (1): 'test-helper-DataBackend.R:1:1'
• raster cannot be loaded (1): 'test-mlr3pipelines-graph-integration.R:4:3'
• skmeans cannot be loaded (1): 'test-mlr_sptcv_generic.R:70:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-ResamplingRepeatedSpCVKnndm.R:21:3'): folds can be printed ─────
Error in `CAST::knndm(tpoints = points, modeldomain = self$param_set$values$modeldomain,
ppoints = self$param_set$values$ppoints, k = self$param_set$values$folds,
maxp = self$param_set$values$maxp, clustering = self$param_set$values$clustering,
linkf = self$param_set$values$linkf, samplesize = self$param_set$values$samplesize,
sampling = self$param_set$values$sampling)`: unused argument (ppoints = self$param_set$values$ppoints)
Backtrace:
▆
1. ├─base::suppressMessages(suppressWarnings(rsp$instantiate(task))) at test-ResamplingRepeatedSpCVKnndm.R:21:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::suppressWarnings(rsp$instantiate(task))
4. │ └─base::withCallingHandlers(...)
5. └─rsp$instantiate(task)
6. └─mlr3spatiotempcv:::.__ResamplingRepeatedSpCVKnndm__instantiate(...)
7. └─private$.sample(task$row_ids, task$coordinates(), task$crs)
8. └─mlr3spatiotempcv:::.__ResamplingRepeatedSpCVKnndm__.sample(...)
9. └─mlr3misc::map(...)
10. └─base::lapply(.x, .f, ...)
11. └─mlr3spatiotempcv (local) FUN(X[[i]], ...)
── Error ('test-ResamplingRepeatedSpCVKnndm.R:31:3'): reps can be printed ──────
Error in `CAST::knndm(tpoints = points, modeldomain = self$param_set$values$modeldomain,
ppoints = self$param_set$values$ppoints, k = self$param_set$values$folds,
maxp = self$param_set$values$maxp, clustering = self$param_set$values$clustering,
linkf = self$param_set$values$linkf, samplesize = self$param_set$values$samplesize,
sampling = self$param_set$values$sampling)`: unused argument (ppoints = self$param_set$values$ppoints)
Backtrace:
▆
1. ├─base::suppressMessages(suppressWarnings(rsp$instantiate(task))) at test-ResamplingRepeatedSpCVKnndm.R:31:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::suppressWarnings(rsp$instantiate(task))
4. │ └─base::withCallingHandlers(...)
5. └─rsp$instantiate(task)
6. └─mlr3spatiotempcv:::.__ResamplingRepeatedSpCVKnndm__instantiate(...)
7. └─private$.sample(task$row_ids, task$coordinates(), task$crs)
8. └─mlr3spatiotempcv:::.__ResamplingRepeatedSpCVKnndm__.sample(...)
9. └─mlr3misc::map(...)
10. └─base::lapply(.x, .f, ...)
11. └─mlr3spatiotempcv (local) FUN(X[[i]], ...)
── Error ('test-ResamplingRepeatedSpCVKnndm.R:41:3'): resampling iterations equals folds * repeats ──
Error in `CAST::knndm(tpoints = points, modeldomain = self$param_set$values$modeldomain,
ppoints = self$param_set$values$ppoints, k = self$param_set$values$folds,
maxp = self$param_set$values$maxp, clustering = self$param_set$values$clustering,
linkf = self$param_set$values$linkf, samplesize = self$param_set$values$samplesize,
sampling = self$param_set$values$sampling)`: unused argument (ppoints = self$param_set$values$ppoints)
Backtrace:
▆
1. ├─base::suppressMessages(suppressWarnings(rsp$instantiate(task))) at test-ResamplingRepeatedSpCVKnndm.R:41:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::suppressWarnings(rsp$instantiate(task))
4. │ └─base::withCallingHandlers(...)
5. └─rsp$instantiate(task)
6. └─mlr3spatiotempcv:::.__ResamplingRepeatedSpCVKnndm__instantiate(...)
7. └─private$.sample(task$row_ids, task$coordinates(), task$crs)
8. └─mlr3spatiotempcv:::.__ResamplingRepeatedSpCVKnndm__.sample(...)
9. └─mlr3misc::map(...)
10. └─base::lapply(.x, .f, ...)
11. └─mlr3spatiotempcv (local) FUN(X[[i]], ...)
── Error ('test-2-autoplot.R:331:3'): plot() works for 'spcv_knndm' ────────────
Error in `CAST::knndm(tpoints = points, modeldomain = self$param_set$values$modeldomain,
ppoints = self$param_set$values$ppoints, k = self$param_set$values$folds,
maxp = self$param_set$values$maxp, clustering = self$param_set$values$clustering,
linkf = self$param_set$values$linkf, samplesize = self$param_set$values$samplesize,
sampling = self$param_set$values$sampling)`: unused argument (ppoints = self$param_set$values$ppoints)
Backtrace:
▆
1. ├─base::suppressMessages(suppressWarnings(rsp$instantiate(task))) at test-2-autoplot.R:331:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::suppressWarnings(rsp$instantiate(task))
4. │ └─base::withCallingHandlers(...)
5. └─rsp$instantiate(task)
6. └─mlr3spatiotempcv:::.__ResamplingRepeatedSpCVKnndm__instantiate(...)
7. └─private$.sample(task$row_ids, task$coordinates(), task$crs)
8. └─mlr3spatiotempcv:::.__ResamplingRepeatedSpCVKnndm__.sample(...)
9. └─mlr3misc::map(...)
10. └─base::lapply(.x, .f, ...)
11. └─mlr3spatiotempcv (local) FUN(X[[i]], ...)
── Error ('test-ResamplingSpCVKnndm.R:10:3'): mlr3spatiotempcv indices are the same as CAST knndm: modeldomain ──
Error in `CAST::knndm(tpoints = points, modeldomain = self$param_set$values$modeldomain,
ppoints = self$param_set$values$ppoints, k = self$param_set$values$folds,
maxp = self$param_set$values$maxp, clustering = self$param_set$values$clustering,
linkf = self$param_set$values$linkf, samplesize = self$param_set$values$samplesize,
sampling = self$param_set$values$sampling)`: unused argument (ppoints = self$param_set$values$ppoints)
Backtrace:
▆
1. ├─base::suppressMessages(suppressWarnings(rsmp$instantiate(task))) at test-ResamplingSpCVKnndm.R:10:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::suppressWarnings(rsmp$instantiate(task))
4. │ └─base::withCallingHandlers(...)
5. └─rsmp$instantiate(task)
6. └─mlr3spatiotempcv:::.__ResamplingSpCVKnndm__instantiate(...)
7. └─private$.sample(task$row_ids, task$coordinates(), task$crs)
8. └─mlr3spatiotempcv:::.__ResamplingSpCVKnndm__.sample(...)
── Error ('test-ResamplingSpCVKnndm.R:38:3'): mlr3spatiotempcv indices are the same as CAST knndm: ppoints ──
Error in `CAST::knndm(tpoints = points, modeldomain = self$param_set$values$modeldomain,
ppoints = self$param_set$values$ppoints, k = self$param_set$values$folds,
maxp = self$param_set$values$maxp, clustering = self$param_set$values$clustering,
linkf = self$param_set$values$linkf, samplesize = self$param_set$values$samplesize,
sampling = self$param_set$values$sampling)`: unused argument (ppoints = self$param_set$values$ppoints)
Backtrace:
▆
1. ├─base::suppressMessages(suppressWarnings(rsmp$instantiate(task))) at test-ResamplingSpCVKnndm.R:38:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::suppressWarnings(rsmp$instantiate(task))
4. │ └─base::withCallingHandlers(...)
5. └─rsmp$instantiate(task)
6. └─mlr3spatiotempcv:::.__ResamplingSpCVKnndm__instantiate(...)
7. └─private$.sample(task$row_ids, task$coordinates(), task$crs)
8. └─mlr3spatiotempcv:::.__ResamplingSpCVKnndm__.sample(...)
[ FAIL 6 | WARN 0 | SKIP 23 | PASS 1197 ]
Deleting unused snapshots:
• 1-autoplot/autoplot-show-blocks-true-show-labels-true.svg
• 1-autoplot/custom-cv-fold-1-2-sample-fold-n.svg
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• 2-autoplot/spcvdisc-show-omitted.svg
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• 2-autoplot/sptcvcstf-2d-time-var-all-test-sets.svg
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• 2-autoplot/sptcvcstf-3d-time-var-fold-1-sample-fold-n.svg
• autoplot_buffer/spcvbuffer-fold-1-2.svg
Error: Test failures
Execution halted
Flavor: r-oldrel-windows-x86_64