BASiNET: Classification of mRNA and lncRNA Sequences using Complex Network Theory

The methodology applied in this package starts with the creation of networks from RNA sequences, in this way the extraction of resources from these networks is performed with a threshold methodology, aiming to make a classification between the classes of the sequences. There are two data present in the package, "sequences" and "sequences2" with 11 and 10 sequences respectively. These sequences were taken from the data set used in the article (LI, Aimin; ZHANG, Junying; ZHOU, Zhongyin, 2014) <doi:10.1186/1471-2105-15-311>.

Version: 0.0.2
Depends: R (≥ 3.4.0)
Imports: igraph, Biostrings, RWeka, randomForest, rgl, rmcfs, grDevices, graphics, stats
Suggests: knitr, rmarkdown
Published: 2017-12-18
Author: Eric Augusto Ito
Maintainer: Eric Augusto Ito <ericaugustoito at hotmail.com>
License: GPL-3
NeedsCompilation: no
CRAN checks: BASiNET results

Downloads:

Reference manual: BASiNET.pdf
Vignettes: Classification of mRNA and lncRNA sequences
Package source: BASiNET_0.0.2.tar.gz
Windows binaries: r-devel: BASiNET_0.0.2.zip, r-release: BASiNET_0.0.2.zip, r-oldrel: not available
OS X El Capitan binaries: r-release: not available
OS X Mavericks binaries: r-oldrel: not available

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