BASiNET: Classification of RNA Sequences using Complex Network Theory

It makes the creation of networks from sequences of RNA, with this is done the abstraction of characteristics of these networks with a methodology of threshold for the purpose of making a classification between the classes of the sequences. There are two data present in the 'BASiNET' package, "sequences" and "sequences2" with 11 and 10 sequences respectively. These sequences were taken from the data set used in the article (LI, Aimin; ZHANG, Junying; ZHOU, Zhongyin, 2014) <doi:10.1186/1471-2105-15-311>. These sequences are used to run examples.

Version: 0.0.3
Depends: R (≥ 3.4.0)
Imports: igraph, Biostrings, RWeka, randomForest, rmcfs, grDevices, graphics, stats, rJava
Suggests: knitr, rmarkdown
Published: 2018-04-18
Author: Eric Augusto Ito
Maintainer: Eric Augusto Ito <ericaugustoito at hotmail.com>
License: GPL-3
NeedsCompilation: no
CRAN checks: BASiNET results

Downloads:

Reference manual: BASiNET.pdf
Vignettes: Classification of mRNA and lncRNA sequences
Package source: BASiNET_0.0.3.tar.gz
Windows binaries: r-devel: BASiNET_0.0.3.zip, r-release: BASiNET_0.0.3.zip, r-oldrel: BASiNET_0.0.3.zip
OS X binaries: r-release: BASiNET_0.0.3.tgz, r-oldrel: BASiNET_0.0.3.tgz
Old sources: BASiNET archive

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