BiBitR: R Wrapper for Java Implementation of BiBit

A simple R wrapper for the Java BiBit algorithm from "A biclustering algorithm for extracting bit-patterns from binary datasets" from Domingo et al. (2011) <doi:10.1093/bioinformatics/btr464>. An simple adaption for the BiBit algorithm which allows noise in the biclusters is also introduced as well as a function to guide the algorithm towards given (sub)patterns. Further, a workflow to derive noisy biclusters from discoverd larger column patterns is included as well.

Version: 0.3.1
Imports: stats, foreign, methods, utils, viridis, cluster, dendextend, lattice, grDevices, graphics, randomcoloR, biclust
Published: 2017-06-30
Author: De Troyer Ewoud
Maintainer: De Troyer Ewoud <ewoud.detroyer at>
License: GPL-3
NeedsCompilation: no
SystemRequirements: Java
Materials: README
CRAN checks: BiBitR results


Reference manual: BiBitR.pdf
Package source: BiBitR_0.3.1.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
OS X El Capitan binaries: r-release: BiBitR_0.3.1.tgz
OS X Mavericks binaries: r-oldrel: BiBitR_0.3.1.tgz
Old sources: BiBitR archive

Reverse dependencies:

Reverse depends: RcmdrPlugin.BiclustGUI


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