CSCDRNA: Covariance Based Single-Cell Decomposition of Bulk Expression Data

Provides accurate cell type proportion estimation by incorporating covariance structure in both single-cell and bulk RNA-seq datasets into the analysis. For more detail, see Karimnezhad, A. (2022) <doi:10.1101/2022.05.13.491858>.

Version: 1.0.3
Depends: R (≥ 4.0)
Imports: nlshrink, limSolve, Biobase, BisqueRNA, methods, plyr, Seurat, MAST
Suggests: testthat (≥ 3.0.0)
Published: 2022-06-24
Author: Ali Karimnezhad [aut, cre, ctb]
Maintainer: Ali Karimnezhad <ali.karimnezhad at>
License: GPL-3
NeedsCompilation: no
Materials: README
CRAN checks: CSCDRNA results


Reference manual: CSCDRNA.pdf


Package source: CSCDRNA_1.0.3.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): CSCDRNA_1.0.3.tgz, r-oldrel (arm64): CSCDRNA_1.0.3.tgz, r-release (x86_64): CSCDRNA_1.0.3.tgz, r-oldrel (x86_64): CSCDRNA_1.0.3.tgz
Old sources: CSCDRNA archive


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