HiCglmi: Probing Factor-Dependent Long-Range Contacts using Regression with Higher-Order Interaction Terms

We propose a generalized linear regression with higher-order interaction terms to assess the influences of genomic features such as DNA-binding proteins and functional elements on long-range contacts from Hi-C experiments.

Version: 1.0
Depends: R (≥ 3.3.0)
Imports: IRanges, GenomeInfoDb, methods, GenomicRanges, Matrix, glmnet, rtracklayer, HiTC, MASS, S4Vectors
Published: 2016-10-17
Author: Raphael Mourad
Maintainer: Raphael Mourad <raphael.mourad at ibcg.biotoul.fr>
License: GPL-2
NeedsCompilation: no
CRAN checks: HiCglmi results


Reference manual: HiCglmi.pdf
Package source: HiCglmi_1.0.tar.gz
Windows binaries: r-devel: HiCglmi_1.0.zip, r-release: HiCglmi_1.0.zip, r-oldrel: HiCglmi_1.0.zip
OS X El Capitan binaries: r-release: not available
OS X Mavericks binaries: r-oldrel: HiCglmi_1.0.tgz


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