TreeSearch: Phylogenetic Tree Search Using Custom Optimality Criteria

Searches for phylogenetic trees that are optimal using a user-defined criterion. Employed in Brazeau Guillerme and Smith (2017) <doi:10.1101/209775>.

Version: 0.0.6
Depends: R (≥ 3.4.0)
Imports: ape (≥ 4.1), phangorn (≥ 2.2.1)
Suggests: testthat
Published: 2017-11-07
Author: Martin R. Smith ORCID iD [aut, cre, cph], Emmanuel Paradis [cph], Klaus Schliep [cph]
Maintainer: Martin R. Smith <martins at gmail.com>
BugReports: https://github.com/ms609/TreeSearch/issues
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
Copyright: Incorporates C code from the ape and phangorn packages by Emmanuel Paradis and Klaus Schliep. Code is copied rather than linked in the absence of a suitable R interface.
URL: https://github.com/ms609/TreeSearch
NeedsCompilation: yes
Materials: README NEWS
CRAN checks: TreeSearch results

Downloads:

Reference manual: TreeSearch.pdf
Package source: TreeSearch_0.0.6.tar.gz
Windows binaries: r-devel: TreeSearch_0.0.6.zip, r-release: TreeSearch_0.0.6.zip, r-oldrel: not available
OS X El Capitan binaries: r-release: TreeSearch_0.0.6.tgz
OS X Mavericks binaries: r-oldrel: not available

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