Implements tools for building and visualising admixture graphs and for extracting equations from them. These equations can be compared to f- statistics obtained from data to test the consistency of a graph against data – for example by comparing the sign of f_4-statistics with the signs predicted by the graph – and graph parameters (edge lengths and admixture proportions) can be fitted to observed statistics.
|Depends:||R (≥ 3.2.2)|
|Imports:||doParallel, dplyr, foreach, ggplot2, graphics, MASS, methods, neldermead, parallel, pracma, stats, utils, grDevices|
|Suggests:||knitr, rmarkdown, testthat|
|Author:||Thomas Mailund [cre, aut], Kalle Leppala [aut], Svend Nielsen [aut]|
|Maintainer:||Thomas Mailund <mailund at birc.au.dk>|
|CRAN checks:||admixturegraph results|
Constructing and fitting admixture graphs to D statistics
|Windows binaries:||r-devel: admixturegraph_1.0.2.zip, r-release: admixturegraph_1.0.2.zip, r-oldrel: admixturegraph_1.0.2.zip|
|OS X Mavericks binaries:||r-release: admixturegraph_1.0.2.tgz, r-oldrel: admixturegraph_1.0.2.tgz|
|Old sources:||admixturegraph archive|
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