cghRA: Array CGH Data Analysis and Visualization

Provides functions to import data from Agilent CGH arrays and process them according to the cghRA workflow. Implements several algorithms such as WACA, STEPS and cnvScore and an interactive graphical interface.

Version: 1.6.0
Depends: methods, Rgb (≥ 1.5.0), R (≥ 2.10)
Imports: DNAcopy, utils, stats
Suggests: tcltk, tkrplot, parallel, GLAD, graphics, grDevices
Published: 2017-03-03
Author: Sylvain Mareschal
Maintainer: Sylvain Mareschal <maressyl at gmail.com>
BugReports: https://github.com/maressyl/R.cghRA/issues
License: GPL (≥ 3)
URL: http://www.ovsa.fr/cghRA
NeedsCompilation: yes
Materials: README NEWS
CRAN checks: cghRA results

Downloads:

Reference manual: cghRA.pdf
Vignettes: How-to guide to cghRA
Package source: cghRA_1.6.0.tar.gz
Windows binaries: r-devel: cghRA_1.6.0.zip, r-release: cghRA_1.6.0.zip, r-oldrel: cghRA_1.6.0.zip
OS X El Capitan binaries: r-release: cghRA_1.6.0.tgz
OS X Mavericks binaries: r-oldrel: cghRA_1.6.0.tgz

Linking:

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