[aut]Differential analyses and Enrichment pipeline for bulk 'ATAC-seq' data analyses. This package combines different packages to have an ultimate package for both data analyses and visualization of 'ATAC-seq' data.
| Version: | 0.2.0 |
| Depends: | R (≥ 3.5.0) |
| Imports: | ChIPseeker, DESeq2, dplyr, edgeR, fgsea, GenomicRanges, ggplot2, ggrepel, grDevices, limma, utils, pheatmap, preprocessCore, RColorBrewer, sva, TxDb.Hsapiens.UCSC.hg38.knownGene, TxDb.Hsapiens.UCSC.hg19.knownGene, TxDb.Mmusculus.UCSC.mm10.knownGene, writexl |
| Suggests: | biomaRt, knitr, rmarkdown |
| Published: | 2021-01-05 |
| Author: | Onur Karakaslar [aut, cre],
Duygu Ucar [aut] |
| Maintainer: | Onur Karakaslar <eonurkara at gmail.com> |
| BugReports: | https://github.com/eonurk/cinaR/issues/ |
| License: | GPL-3 |
| URL: | https://github.com/eonurk/cinaR/ |
| NeedsCompilation: | no |
| Materials: | README NEWS |
| CRAN checks: | cinaR results |
| Reference manual: | cinaR.pdf |
| Vignettes: |
cinaR |
| Package source: | cinaR_0.2.0.tar.gz |
| Windows binaries: | r-devel: cinaR_0.2.0.zip, r-release: cinaR_0.2.0.zip, r-oldrel: cinaR_0.2.0.zip |
| macOS binaries: | r-release: not available, r-oldrel: not available |
| Old sources: | cinaR archive |
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