mGSZ: Gene set analysis based on GSZ-scoring function and asymptotic p-value

Performs gene set analysis based on GSZ scoring function and asymptotic p-value. It is different from GSZ in that it implements asymptotic p-values instead of empirical p-values. Asymptotic p-values are calculated by fitting suitable distribution model to the null distribution. Unlike empirical p-values, resolution of asymptotic p-values are independent of the number of permutations and hence requires considerably fewer permutations. In addition, this package allows gene set analysis with seven other popular gene set analysis methods.

Version: 1.0
Depends: R (≥ 3.0.0), Biobase, GSA, limma, MASS, ismev
Published: 2014-02-19
Author: Pashupati Mishra, Petri Toronen
Maintainer: Pashupati Mishra <pashupati.mishra at helsinki.fi>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: no
CRAN checks: mGSZ results

Downloads:

Reference manual: mGSZ.pdf
Package source: mGSZ_1.0.tar.gz
Windows binaries: r-devel: mGSZ_1.0.zip, r-release: mGSZ_1.0.zip, r-oldrel: mGSZ_1.0.zip
OS X Mavericks binaries: r-release: mGSZ_1.0.tgz, r-oldrel: mGSZ_1.0.tgz

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