Performs gene set analysis based on GSZ scoring function and asymptotic p-value. It is different from GSZ in that it implements asymptotic p-values instead of empirical p-values. Asymptotic p-values are calculated by fitting suitable distribution model to the null distribution. Unlike empirical p-values, resolution of asymptotic p-values are independent of the number of permutations and hence requires considerably fewer permutations. In addition, this package allows gene set analysis with seven other popular gene set analysis methods.
|Depends:||R (≥ 3.0.0), Biobase, GSA, limma, MASS, ismev|
|Author:||Pashupati Mishra, Petri Toronen|
|Maintainer:||Pashupati Mishra <pashupati.mishra at helsinki.fi>|
|License:||GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]|
|CRAN checks:||mGSZ results|
|Windows binaries:||r-devel: mGSZ_1.0.zip, r-release: mGSZ_1.0.zip, r-oldrel: mGSZ_1.0.zip|
|OS X Mavericks binaries:||r-release: mGSZ_1.0.tgz, r-oldrel: mGSZ_1.0.tgz|
Please use the canonical form https://CRAN.R-project.org/package=mGSZ to link to this page.