A set of tools for identifying genes whose differential expression is associated with measurements of other covariates on a continuous scale. These methods rely on generalized additive partially linear models which can be fitted efficiently using a B-spline basis approximation. Still under development: methods for interfacing with objects extending the eSet class and a function to pass linear models in edgeR and DEseq format.
|Depends:||R (≥ 2.14.2), MASS, splines, limma, R.oo|
|Suggests:||Biobase, edgeR, DESeq|
|Maintainer:||Jonas <jonasmueller303 at hotmail.com>|
|License:||GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]|
|CRAN checks:||plmDE results|
|Windows binaries:||r-devel: plmDE_1.0.zip, r-release: plmDE_1.0.zip, r-oldrel: plmDE_1.0.zip|
|OS X Mavericks binaries:||r-release: plmDE_1.0.tgz, r-oldrel: plmDE_1.0.tgz|
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