data.table explicitly in the R code (before was
imported only in C/C++ code)‘linCmt()’ translations of ‘alpha’, ‘beta’, ‘gamma’, ‘k21’, ‘k31’, ‘vc’ now error instead of ignoring ‘gamma’ and ‘k31’ to give 2 cmt solution
transit compartment internal code now changes dose to 0.0 when no
dose has been administered to the depot compartment. This way dosing to
the central compartment (without dosing to the transit compartment) will
not give a NA for the depot compartment (and consequently
for the central compartment)
Moved rxDerived here and added tests for it here as
well.
Moved etTransParse here and added tests for it here
as well (makes up most of etTrans). In addition the
following changes were made to
etTransParse()/etTrans():
The internal translation (etTrans()) will not drop
times when infusions stop. Before, if the infusion stopped after the
last observation the time when the infusion stopped would be dropped.
This interferes with linCmt() models.
Breaking change/bug fix evid=2 are considered
observations when translating data to internal rxode2 event
structure
Fix edge case to find infusion duration when it is the first item of the dosing record at time 0.
Fixed a bug for certain infusions where the rate,
ii and/or ss data items were dropped from the
output when addDosing=TRUE
Also have internal functions to convert between classic NONMEM events and rxode2 events
Have an internal function that gives information on the linear compartmental model translation type, which could be useful for babelmixr2
‘time’ in model is now case insensitive
Use function declaration in
rxode2parseGetTranslation() to determine thread safety of
functions available to rxode2
Add check for correct number of function arguments to parser.
Like R, known functions can be assigned as a variable and the
function can still be called (while not changing the variable value).
For example you can have a variable gamma as well as a
function gamma().
Fix garbled error messages that occur with certain messages.
Fixed errors that occurred when using capitalized AMT variables in the model.
Bug fix for strict prototypes
Removed sprintf as noted by CRAN
Made rxode2parse dll binary independent of
rxode2()
Initial release to split of rxode2parse from rxode2 to reduce compilation time of ‘rxode2’
Added a NEWS.md file to track changes to the
package.