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Use function SmoothKNN() from the UCell package for nearest neighbor smoothing of signature scores
Clean up code for CRAN submission
Simultaneously evaluate multiple gating models, given as a list to model parameter. This returns individual gatings as well as a combined cell type annotation from all the models (scGate_multi metadata column), and allows running scGate as a multi-class classifier and annotate cell types in a dataset.
New reduction parameter: this i) Allows nearest-neighbor smoothing on an existing dimensionality reduction (e.g. "pca" or "harmony") and ii) Can significantly speed up computation time and annotation of integrated objects