treespace: Statistical Exploration of Landscapes of Phylogenetic Trees

Tools for the exploration of distributions of phylogenetic trees. This package includes a shiny interface which can be started from R using 'treespaceServer()'.

Version: 1.0.0
Depends: R (≥ 3.1.2), ape, ade4
Imports: adegenet, adegraphics, adephylo, combinat, compiler, distory, fields, htmlwidgets, MASS, phangorn, Rcpp, RLumShiny, scatterD3, shiny, shinyBS, utils
LinkingTo: Rcpp
Suggests: igraph, RColorBrewer, ggplot2, testthat, knitr, rmarkdown, rgl
Published: 2017-03-17
Author: Thibaut Jombart [aut, cre], Michelle Kendall [aut], Jacob Almagro-Garcia [aut], Caroline Colijn [aut]
Maintainer: Thibaut Jombart <thibautjombart at gmail.com>
License: MIT + file LICENSE
NeedsCompilation: yes
Materials: README
CRAN checks: treespace results

Downloads:

Reference manual: treespace.pdf
Vignettes: treespace worked example: Dengue trees
treespace worked example: Transmission trees
treespace: exploration of landscapes of phylogenetic trees
Package source: treespace_1.0.0.tar.gz
Windows binaries: r-devel: treespace_1.0.0.zip, r-release: treespace_1.0.0.zip, r-oldrel: treespace_1.0.0.zip
OS X Mavericks binaries: r-release: treespace_1.0.0.tgz, r-oldrel: treespace_1.0.0.tgz

Linking:

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