voluModel: Modeling Species Distributions in Three Dimensions

Facilitates modeling species' ecological niches and geographic distributions based on occurrences and environments that have a vertical as well as horizontal component, and projecting models into three-dimensional geographic space. Working in three dimensions is useful in an aquatic context when the organisms one wishes to model can be found across a wide range of depths in the water column. The package also contains functions to automatically generate marine training model training regions using machine learning, and interpolate and smooth patchily sampled environmental rasters using thin plate splines. Davis Rabosky AR, Cox CL, Rabosky DL, Title PO, Holmes IA, Feldman A, McGuire JA (2016) <doi:10.1038/ncomms11484>. Nychka D, Furrer R, Paige J, Sain S (2021) <doi:10.5065/D6W957CT>. Pateiro-Lopez B, Rodriguez-Casal A (2022) <https://CRAN.R-project.org/package=alphahull>.

Version: 0.1.7
Depends: R (≥ 4.0.0)
Imports: dplyr, dismo, fields, ggplot2, ggtext, grDevices, lattice, latticeExtra, methods, raster, rangeBuilder, rgeos, terra, viridisLite, sp
Suggests: testthat (≥ 3.0.0), nlme, knitr, covr, gridExtra, rgdal, rmarkdown, rnaturalearth, rnaturalearthdata, tibble
Published: 2022-11-17
Author: Hannah L. Owens ORCID iD [aut, cre], Carsten Rahbek ORCID iD [aut]
Maintainer: Hannah L. Owens <hannah.owens at gmail.com>
BugReports: https://github.com/hannahlowens/voluModel/issues
License: GPL-3
URL: https://hannahlowens.github.io/voluModel/
NeedsCompilation: no
Citation: voluModel citation info
Materials: NEWS
CRAN checks: voluModel results

Documentation:

Reference manual: voluModel.pdf
Vignettes: 1. Introduction to 'voluModel'
2. Processing Raster Data
3. Environmental Data Sampling
4. Visualization Tools
5. 3D Niche Modeling with the GLM Algorithm

Downloads:

Package source: voluModel_0.1.7.tar.gz
Windows binaries: r-devel: voluModel_0.1.7.zip, r-release: voluModel_0.1.6.zip, r-oldrel: voluModel_0.1.7.zip
macOS binaries: r-release (arm64): voluModel_0.1.6.tgz, r-oldrel (arm64): voluModel_0.1.7.tgz, r-release (x86_64): voluModel_0.1.7.tgz, r-oldrel (x86_64): voluModel_0.1.7.tgz
Old sources: voluModel archive

Linking:

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