* using log directory 'd:/Rcompile/CRANpkg/local/4.5/DeCAFS.Rcheck' * using R Under development (unstable) (2024-06-07 r86704 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 13.2.0 GNU Fortran (GCC) 13.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'DeCAFS/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'DeCAFS' version '3.3.3' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'DeCAFS' can be installed ... OK * used C++ compiler: 'g++.exe (GCC) 13.2.0' * checking C++ specification ... NOTE Specified C++14: please drop specification unless essential * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [1s] OK * checking whether the package can be loaded with stated dependencies ... [1s] OK * checking whether the package can be unloaded cleanly ... [0s] WARNING * checking whether the namespace can be loaded with stated dependencies ... [0s] WARNING Fatal error: couldn't allocate node stack A namespace must be able to be loaded with just the base namespace loaded: otherwise if the namespace gets loaded by a saved object, the session will be unable to start. Probably some imports need to be declared in the NAMESPACE file. * checking whether the namespace can be unloaded cleanly ... [0s] WARNING * checking loading without being on the library search path ... [0s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [5s] OK * checking Rd files ... [1s] OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... [0s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking pragmas in C/C++ headers and code ... OK * checking compiled code ... OK * checking examples ... [4s] ERROR Running examples in 'DeCAFS-Ex.R' failed The error most likely occurred in: > ### Name: oilWell > ### Title: Rock structure data from an oil well > ### Aliases: oilWell > ### Keywords: datasets > > ### ** Examples > > > # removing outliers > n = length(oilWell) > h = 32 > med = rep(NA, n) > for (i in 1:n) { + index = max(1, i - h):min(n, i + h) + med[i] = median(oilWell[index]) + } > residual = (oilWell - med) > > y = oilWell[abs(residual) < 8000] > sigma = sqrt(var(residual[abs(residual) < 8000])) > > # running DeCAFS > res <- DeCAFS(y/sigma) Warning: Automatic parameters estimation employed. The choice of penalties for DeCAFS is important - where possible investigate the returned segmentation. For more details about initial parameters estimation, please see help('estimateParameters'). If unsure of which model is the most suited for a given sequence, run guidedModelSelection(). To silence this warning when using DeCAFS, run DeCAFS with argument: warningMessage = FALSE. > plot(res, xlab = "time", ylab = "y", type = "l") Error in plot.new() : 'R_Calloc' could not allocate memory (2354059 of 1 bytes) Calls: plot -> plot.DeCAFSout -> plot -> plot.default -> plot.new Execution halted * checking PDF version of manual ... [6s] OK * checking HTML version of manual ...