* using log directory 'd:/Rcompile/CRANpkg/local/4.5/DendroSync.Rcheck' * using R Under development (unstable) (2024-06-07 r86704 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 13.2.0 GNU Fortran (GCC) 13.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'DendroSync/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'DendroSync' version '0.1.4' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'DendroSync' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [2s] OK * checking whether the package can be loaded with stated dependencies ... [1s] WARNING Loading required package: nlme Loading required package: ggplot2 Error: package or namespace load failed for 'ggplot2' in inDL(x, as.logical(local), as.logical(now), ...): unable to load shared object 'D:/RCompile/CRANpkg/lib/4.5/vctrs/libs/x64/vctrs.dll': LoadLibrary failure: Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen. Error: package 'ggplot2' could not be loaded Execution halted It looks like this package (or one of its dependent packages) has an unstated dependence on a standard package. All dependencies must be declared in DESCRIPTION. See section 'The DESCRIPTION file' in the 'Writing R Extensions' manual. * checking whether the package can be unloaded cleanly ... [1s] OK * checking whether the namespace can be loaded with stated dependencies ... [1s] WARNING A namespace must be able to be loaded with just the base namespace loaded: otherwise if the namespace gets loaded by a saved object, the session will be unable to start. Probably some imports need to be declared in the NAMESPACE file. * checking whether the namespace can be unloaded cleanly ... [1s] OK * checking loading without being on the library search path ... [1s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... WARNING Fatal error: couldn't allocate memory for pointer stack The argument of a replacement function which corresponds to the right hand side must be named 'value'. * checking foreign function calls ... OK * checking R code for possible problems ... [5s] NOTE Fatal error: couldn't allocate node stack * checking Rd files ... [1s] NOTE checkRd: (-1) conifersIP.Rd:9: Lost braces; missing escapes or markup? 9 | \code{conifersIP} {has following variables:} | ^ checkRd: (-1) conifersIP.Rd:11: Lost braces in \itemize; meant \describe ? checkRd: (-1) conifersIP.Rd:12: Lost braces in \itemize; meant \describe ? checkRd: (-1) conifersIP.Rd:13: Lost braces in \itemize; meant \describe ? checkRd: (-1) conifersIP.Rd:14: Lost braces in \itemize; meant \describe ? checkRd: (-1) conifersIP.Rd:15: Lost braces in \itemize; meant \describe ? checkRd: (-1) sync.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) sync.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) sync.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) sync.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) sync.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) sync.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) sync.Rd:28: Lost braces in \itemize; \value handles \item{}{} directly * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... [0s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... [3s] ERROR Running examples in 'DendroSync-Ex.R' failed The error most likely occurred in: > ### Name: bet.aSE > ### Title: Between-group synchrony for a homoscedastic unstructured model > ### Aliases: bet.aSE > > ### ** Examples > > ## Calculate between-group synchrony and SE > # for an unstructured homocedastic model of conifersIP data: > data(conifersIP) > > #Fit the homoscedastic set of varcov models (mBE, mNE, mCS, mUN) > # using taxonomic grouping criteria (ie. Species) > ModHm <- dendro.varcov(TRW ~ Code, varTime = "Year", varGroup = "Species", + data = conifersIP, homoscedastic = TRUE) [1] "Please wait. I am fitting the models now :)" Error in FUN(newX[, i], ...) : 'R_Calloc' could not allocate memory (45291 of 8 bytes) Calls: dendro.varcov ... lmeApVar -> fdHess -> solve -> solve.default -> apply -> FUN Execution halted * checking PDF version of manual ... [0s] WARNING LaTeX errors when creating PDF version. This typically indicates Rd problems. * checking PDF version of manual without index ... ERROR Re-running with no redirection of stdout/stderr. * checking HTML version of manual ... [3s] OK * DONE Status: 2 ERRORs, 4 WARNINGs, 2 NOTEs