Last updated on 2023-11-28 23:04:31 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1-1 | 17.57 | 564.94 | 582.51 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.1-1 | 10.11 | 389.57 | 399.68 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.1-1 | 681.55 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.1-1 | 691.71 | OK | |||
| r-devel-windows-x86_64 | 1.1-1 | 15.00 | 389.00 | 404.00 | OK | |
| r-patched-linux-x86_64 | 1.1-1 | 14.51 | 526.65 | 541.16 | OK | |
| r-release-linux-x86_64 | 1.1-1 | 14.04 | 493.33 | 507.37 | ERROR | |
| r-release-macos-arm64 | 1.1-1 | 213.00 | OK | |||
| r-release-macos-x86_64 | 1.1-1 | 408.00 | OK | |||
| r-release-windows-x86_64 | 1.1-1 | 21.00 | 521.00 | 542.00 | OK | |
| r-oldrel-macos-arm64 | 1.1-1 | 245.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.0-5 | 206.00 | OK | |||
| r-oldrel-windows-x86_64 | 1.1-1 | 21.00 | 514.00 | 535.00 | OK |
Version: 1.1-1
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘RBesT’
Flavor: r-release-linux-x86_64
Version: 1.1-1
Check: examples
Result: ERROR
Running examples in ‘DoseFinding-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: bMCTtest
> ### Title: Performs Bayesian multiple contrast test
> ### Aliases: bMCTtest
>
> ### ** Examples
>
>
> require(RBesT)
Loading required package: RBesT
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
there is no package called ‘RBesT’
>
> ###############################
> ## Normal outcome
> ###############################
>
> data(biom)
> ## define shapes for which to calculate optimal contrasts
> doses <- c(0, 0.05, 0.2, 0.6, 1)
> modlist <- Mods(emax = 0.05, linear = NULL, logistic = c(0.5, 0.1),
+ linInt = c(0, 1, 1, 1), doses = doses)
> ## specify an informative prior for placebo, weakly informative for other arms
> plc_prior <- mixnorm(inf = c(0.8, 0.4, 0.1), rob = c(0.2, 0.4, 10))
Error in mixnorm(inf = c(0.8, 0.4, 0.1), rob = c(0.2, 0.4, 10)) :
could not find function "mixnorm"
Execution halted
Flavor: r-release-linux-x86_64
Version: 1.1-1
Check: tests
Result: ERROR
Running ‘testgFit.R’ [3s/3s]
Running ‘testplanMod.R’ [0s/1s]
Running ‘testsDesign.R’ [4s/6s]
Running ‘testsFitting.R’ [2s/3s]
Running ‘testsMCPMod.R’ [4s/5s]
Running ‘testsMCT.R’ [5s/6s]
Running ‘testsoptContr.R’ [2s/2s]
Running ‘testsplotDRMod.R’ [0s/1s]
Running ‘testssampSize.R’ [0s/1s]
Running ‘testssamplMod.R’ [4s/4s]
Running ‘testthat.R’ [21s/25s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> ## Note: Files in this directory are old test cases that accumulated
> ## historically over time, many of them commented out for time reasons
> ## (and unorganized due to lack of anything close to testthat at the
> ## time of creation). The testthat sub-directory now contains a
> ## selected subset of these tests (with some additions) that have been
> ## brought in the testthat format.
> library(testthat)
> library(DoseFinding)
Loading required package: ggplot2
Loading required package: lattice
Loading required package: mvtnorm
> options(testthat.progress.max_fails = 100)
>
> Sys.unsetenv("R_TESTS")
> test_check("DoseFinding")
Running simulations
Scenario 1/5
|
| | 0%
|
|* | 1%
|
|* | 2%
|
|** | 3%
|
|*** | 4%
|
|**** | 5%
|
|**** | 6%
|
|***** | 7%
|
|****** | 8%
|
|****** | 9%
|
|******* | 10%
|
|******** | 11%
|
|******** | 12%
|
|********* | 13%
|
|********** | 14%
|
|********** | 15%
|
|*********** | 16%
|
|************ | 17%
|
|************* | 18%
|
|************* | 19%
|
|************** | 20%
|
|*************** | 21%
|
|*************** | 22%
|
|**************** | 23%
|
|***************** | 24%
|
|****************** | 25%
|
|****************** | 26%
|
|******************* | 27%
|
|******************** | 28%
|
|******************** | 29%
|
|********************* | 30%
|
|********************** | 31%
|
|********************** | 32%
|
|*********************** | 33%
|
|************************ | 34%
|
|************************ | 35%
|
|************************* | 36%
|
|************************** | 37%
|
|*************************** | 38%
|
|*************************** | 39%
|
|**************************** | 40%
|
|***************************** | 41%
|
|***************************** | 42%
|
|****************************** | 43%
|
|******************************* | 44%
|
|******************************** | 45%
|
|******************************** | 46%
|
|********************************* | 47%
|
|********************************** | 48%
|
|********************************** | 49%
|
|*********************************** | 50%
|
|************************************ | 51%
|
|************************************ | 52%
|
|************************************* | 53%
|
|************************************** | 54%
|
|************************************** | 55%
|
|*************************************** | 56%
|
|**************************************** | 57%
|
|***************************************** | 58%
|
|***************************************** | 59%
|
|****************************************** | 60%
|
|******************************************* | 61%
|
|******************************************* | 62%
|
|******************************************** | 63%
|
|********************************************* | 64%
|
|********************************************** | 65%
|
|********************************************** | 66%
|
|*********************************************** | 67%
|
|************************************************ | 68%
|
|************************************************ | 69%
|
|************************************************* | 70%
|
|************************************************** | 71%
|
|************************************************** | 72%
|
|*************************************************** | 73%
|
|**************************************************** | 74%
|
|**************************************************** | 75%
|
|***************************************************** | 76%
|
|****************************************************** | 77%
|
|******************************************************* | 78%
|
|******************************************************* | 79%
|
|******************************************************** | 80%
|
|********************************************************* | 81%
|
|********************************************************* | 82%
|
|********************************************************** | 83%
|
|*********************************************************** | 84%
|
|************************************************************ | 85%
|
|************************************************************ | 86%
|
|************************************************************* | 87%
|
|************************************************************** | 88%
|
|************************************************************** | 89%
|
|*************************************************************** | 90%
|
|**************************************************************** | 91%
|
|**************************************************************** | 92%
|
|***************************************************************** | 93%
|
|****************************************************************** | 94%
|
|****************************************************************** | 95%
|
|******************************************************************* | 96%
|
|******************************************************************** | 97%
|
|********************************************************************* | 98%
|
|********************************************************************* | 99%
|
|**********************************************************************| 100%
Scenario 2/5
|
| | 0%
|
|* | 1%
|
|* | 2%
|
|** | 3%
|
|*** | 4%
|
|**** | 5%
|
|**** | 6%
|
|***** | 7%
|
|****** | 8%
|
|****** | 9%
|
|******* | 10%
|
|******** | 11%
|
|******** | 12%
|
|********* | 13%
|
|********** | 14%
|
|********** | 15%
|
|*********** | 16%
|
|************ | 17%
|
|************* | 18%
|
|************* | 19%
|
|************** | 20%
|
|*************** | 21%
|
|*************** | 22%
|
|**************** | 23%
|
|***************** | 24%
|
|****************** | 25%
|
|****************** | 26%
|
|******************* | 27%
|
|******************** | 28%
|
|******************** | 29%
|
|********************* | 30%
|
|********************** | 31%
|
|********************** | 32%
|
|*********************** | 33%
|
|************************ | 34%
|
|************************ | 35%
|
|************************* | 36%
|
|************************** | 37%
|
|*************************** | 38%
|
|*************************** | 39%
|
|**************************** | 40%
|
|***************************** | 41%
|
|***************************** | 42%
|
|****************************** | 43%
|
|******************************* | 44%
|
|******************************** | 45%
|
|******************************** | 46%
|
|********************************* | 47%
|
|********************************** | 48%
|
|********************************** | 49%
|
|*********************************** | 50%
|
|************************************ | 51%
|
|************************************ | 52%
|
|************************************* | 53%
|
|************************************** | 54%
|
|************************************** | 55%
|
|*************************************** | 56%
|
|**************************************** | 57%
|
|***************************************** | 58%
|
|***************************************** | 59%
|
|****************************************** | 60%
|
|******************************************* | 61%
|
|******************************************* | 62%
|
|******************************************** | 63%
|
|********************************************* | 64%
|
|********************************************** | 65%
|
|********************************************** | 66%
|
|*********************************************** | 67%
|
|************************************************ | 68%
|
|************************************************ | 69%
|
|************************************************* | 70%
|
|************************************************** | 71%
|
|************************************************** | 72%
|
|*************************************************** | 73%
|
|**************************************************** | 74%
|
|**************************************************** | 75%
|
|***************************************************** | 76%
|
|****************************************************** | 77%
|
|******************************************************* | 78%
|
|******************************************************* | 79%
|
|******************************************************** | 80%
|
|********************************************************* | 81%
|
|********************************************************* | 82%
|
|********************************************************** | 83%
|
|*********************************************************** | 84%
|
|************************************************************ | 85%
|
|************************************************************ | 86%
|
|************************************************************* | 87%
|
|************************************************************** | 88%
|
|************************************************************** | 89%
|
|*************************************************************** | 90%
|
|**************************************************************** | 91%
|
|**************************************************************** | 92%
|
|***************************************************************** | 93%
|
|****************************************************************** | 94%
|
|****************************************************************** | 95%
|
|******************************************************************* | 96%
|
|******************************************************************** | 97%
|
|********************************************************************* | 98%
|
|********************************************************************* | 99%
|
|**********************************************************************| 100%
Scenario 3/5
|
| | 0%
|
|* | 1%
|
|* | 2%
|
|** | 3%
|
|*** | 4%
|
|**** | 5%
|
|**** | 6%
|
|***** | 7%
|
|****** | 8%
|
|****** | 9%
|
|******* | 10%
|
|******** | 11%
|
|******** | 12%
|
|********* | 13%
|
|********** | 14%
|
|********** | 15%
|
|*********** | 16%
|
|************ | 17%
|
|************* | 18%
|
|************* | 19%
|
|************** | 20%
|
|*************** | 21%
|
|*************** | 22%
|
|**************** | 23%
|
|***************** | 24%
|
|****************** | 25%
|
|****************** | 26%
|
|******************* | 27%
|
|******************** | 28%
|
|******************** | 29%
|
|********************* | 30%
|
|********************** | 31%
|
|********************** | 32%
|
|*********************** | 33%
|
|************************ | 34%
|
|************************ | 35%
|
|************************* | 36%
|
|************************** | 37%
|
|*************************** | 38%
|
|*************************** | 39%
|
|**************************** | 40%
|
|***************************** | 41%
|
|***************************** | 42%
|
|****************************** | 43%
|
|******************************* | 44%
|
|******************************** | 45%
|
|******************************** | 46%
|
|********************************* | 47%
|
|********************************** | 48%
|
|********************************** | 49%
|
|*********************************** | 50%
|
|************************************ | 51%
|
|************************************ | 52%
|
|************************************* | 53%
|
|************************************** | 54%
|
|************************************** | 55%
|
|*************************************** | 56%
|
|**************************************** | 57%
|
|***************************************** | 58%
|
|***************************************** | 59%
|
|****************************************** | 60%
|
|******************************************* | 61%
|
|******************************************* | 62%
|
|******************************************** | 63%
|
|********************************************* | 64%
|
|********************************************** | 65%
|
|********************************************** | 66%
|
|*********************************************** | 67%
|
|************************************************ | 68%
|
|************************************************ | 69%
|
|************************************************* | 70%
|
|************************************************** | 71%
|
|************************************************** | 72%
|
|*************************************************** | 73%
|
|**************************************************** | 74%
|
|**************************************************** | 75%
|
|***************************************************** | 76%
|
|****************************************************** | 77%
|
|******************************************************* | 78%
|
|******************************************************* | 79%
|
|******************************************************** | 80%
|
|********************************************************* | 81%
|
|********************************************************* | 82%
|
|********************************************************** | 83%
|
|*********************************************************** | 84%
|
|************************************************************ | 85%
|
|************************************************************ | 86%
|
|************************************************************* | 87%
|
|************************************************************** | 88%
|
|************************************************************** | 89%
|
|*************************************************************** | 90%
|
|**************************************************************** | 91%
|
|**************************************************************** | 92%
|
|***************************************************************** | 93%
|
|****************************************************************** | 94%
|
|****************************************************************** | 95%
|
|******************************************************************* | 96%
|
|******************************************************************** | 97%
|
|********************************************************************* | 98%
|
|********************************************************************* | 99%
|
|**********************************************************************| 100%
Scenario 4/5
|
| | 0%
|
|* | 1%
|
|* | 2%
|
|** | 3%
|
|*** | 4%
|
|**** | 5%
|
|**** | 6%
|
|***** | 7%
|
|****** | 8%
|
|****** | 9%
|
|******* | 10%
|
|******** | 11%
|
|******** | 12%
|
|********* | 13%
|
|********** | 14%
|
|********** | 15%
|
|*********** | 16%
|
|************ | 17%
|
|************* | 18%
|
|************* | 19%
|
|************** | 20%
|
|*************** | 21%
|
|*************** | 22%
|
|**************** | 23%
|
|***************** | 24%
|
|****************** | 25%
|
|****************** | 26%
|
|******************* | 27%
|
|******************** | 28%
|
|******************** | 29%
|
|********************* | 30%
|
|********************** | 31%
|
|********************** | 32%
|
|*********************** | 33%
|
|************************ | 34%
|
|************************ | 35%
|
|************************* | 36%
|
|************************** | 37%
|
|*************************** | 38%
|
|*************************** | 39%
|
|**************************** | 40%
|
|***************************** | 41%
|
|***************************** | 42%
|
|****************************** | 43%
|
|******************************* | 44%
|
|******************************** | 45%
|
|******************************** | 46%
|
|********************************* | 47%
|
|********************************** | 48%
|
|********************************** | 49%
|
|*********************************** | 50%
|
|************************************ | 51%
|
|************************************ | 52%
|
|************************************* | 53%
|
|************************************** | 54%
|
|************************************** | 55%
|
|*************************************** | 56%
|
|**************************************** | 57%
|
|***************************************** | 58%
|
|***************************************** | 59%
|
|****************************************** | 60%
|
|******************************************* | 61%
|
|******************************************* | 62%
|
|******************************************** | 63%
|
|********************************************* | 64%
|
|********************************************** | 65%
|
|********************************************** | 66%
|
|*********************************************** | 67%
|
|************************************************ | 68%
|
|************************************************ | 69%
|
|************************************************* | 70%
|
|************************************************** | 71%
|
|************************************************** | 72%
|
|*************************************************** | 73%
|
|**************************************************** | 74%
|
|**************************************************** | 75%
|
|***************************************************** | 76%
|
|****************************************************** | 77%
|
|******************************************************* | 78%
|
|******************************************************* | 79%
|
|******************************************************** | 80%
|
|********************************************************* | 81%
|
|********************************************************* | 82%
|
|********************************************************** | 83%
|
|*********************************************************** | 84%
|
|************************************************************ | 85%
|
|************************************************************ | 86%
|
|************************************************************* | 87%
|
|************************************************************** | 88%
|
|************************************************************** | 89%
|
|*************************************************************** | 90%
|
|**************************************************************** | 91%
|
|**************************************************************** | 92%
|
|***************************************************************** | 93%
|
|****************************************************************** | 94%
|
|****************************************************************** | 95%
|
|******************************************************************* | 96%
|
|******************************************************************** | 97%
|
|********************************************************************* | 98%
|
|********************************************************************* | 99%
|
|**********************************************************************| 100%
Scenario 5/5
|
| | 0%
|
|* | 1%
|
|* | 2%
|
|** | 3%
|
|*** | 4%
|
|**** | 5%
|
|**** | 6%
|
|***** | 7%
|
|****** | 8%
|
|****** | 9%
|
|******* | 10%
|
|******** | 11%
|
|******** | 12%
|
|********* | 13%
|
|********** | 14%
|
|********** | 15%
|
|*********** | 16%
|
|************ | 17%
|
|************* | 18%
|
|************* | 19%
|
|************** | 20%
|
|*************** | 21%
|
|*************** | 22%
|
|**************** | 23%
|
|***************** | 24%
|
|****************** | 25%
|
|****************** | 26%
|
|******************* | 27%
|
|******************** | 28%
|
|******************** | 29%
|
|********************* | 30%
|
|********************** | 31%
|
|********************** | 32%
|
|*********************** | 33%
|
|************************ | 34%
|
|************************ | 35%
|
|************************* | 36%
|
|************************** | 37%
|
|*************************** | 38%
|
|*************************** | 39%
|
|**************************** | 40%
|
|***************************** | 41%
|
|***************************** | 42%
|
|****************************** | 43%
|
|******************************* | 44%
|
|******************************** | 45%
|
|******************************** | 46%
|
|********************************* | 47%
|
|********************************** | 48%
|
|********************************** | 49%
|
|*********************************** | 50%
|
|************************************ | 51%
|
|************************************ | 52%
|
|************************************* | 53%
|
|************************************** | 54%
|
|************************************** | 55%
|
|*************************************** | 56%
|
|**************************************** | 57%
|
|***************************************** | 58%
|
|***************************************** | 59%
|
|****************************************** | 60%
|
|******************************************* | 61%
|
|******************************************* | 62%
|
|******************************************** | 63%
|
|********************************************* | 64%
|
|********************************************** | 65%
|
|********************************************** | 66%
|
|*********************************************** | 67%
|
|************************************************ | 68%
|
|************************************************ | 69%
|
|************************************************* | 70%
|
|************************************************** | 71%
|
|************************************************** | 72%
|
|*************************************************** | 73%
|
|**************************************************** | 74%
|
|**************************************************** | 75%
|
|***************************************************** | 76%
|
|****************************************************** | 77%
|
|******************************************************* | 78%
|
|******************************************************* | 79%
|
|******************************************************** | 80%
|
|********************************************************* | 81%
|
|********************************************************* | 82%
|
|********************************************************** | 83%
|
|*********************************************************** | 84%
|
|************************************************************ | 85%
|
|************************************************************ | 86%
|
|************************************************************* | 87%
|
|************************************************************** | 88%
|
|************************************************************** | 89%
|
|*************************************************************** | 90%
|
|**************************************************************** | 91%
|
|**************************************************************** | 92%
|
|***************************************************************** | 93%
|
|****************************************************************** | 94%
|
|****************************************************************** | 95%
|
|******************************************************************* | 96%
|
|******************************************************************** | 97%
|
|********************************************************************* | 98%
|
|********************************************************************* | 99%
|
|**********************************************************************| 100%
[ FAIL 1 | WARN 10 | SKIP 12 | PASS 171 ]
══ Skipped tests (12) ══════════════════════════════════════════════════════════
• On CRAN (2): 'test-optContr.R:81:3', 'test-planMod.R:27:3'
• RBesT package not available (10): 'test-bMCTtest.R:57:3',
'test-bMCTtest.R:81:3', 'test-bMCTtest.R:103:3', 'test-bMCTtest.R:125:3',
'test-bMCTtest.R:147:3', 'test-bMCTtest.R:169:3', 'test-bMCTtest.R:189:3',
'test-bMCTtest.R:213:3', 'test-bMCTtest.R:228:3', 'test-bMCTtest.R:244:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-bMCTtest.R:266:3'): Error message for incorrect prior arguments ──
Error in `mixnorm(inf = c(0.8, 0.4, 0.1), rob = c(0.2, 0.4, 10))`: could not find function "mixnorm"
[ FAIL 1 | WARN 10 | SKIP 12 | PASS 171 ]
Error: Test failures
Execution halted
Flavor: r-release-linux-x86_64