CRAN Package Check Results for Package NetRep

Last updated on 2020-01-17 22:50:58 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.2.1 154.45 152.79 307.24 OK
r-devel-linux-x86_64-debian-gcc 1.2.1 98.96 114.92 213.88 OK
r-devel-linux-x86_64-fedora-clang 1.2.1 399.44 NOTE
r-devel-linux-x86_64-fedora-gcc 1.2.1 382.42 OK
r-devel-windows-ix86+x86_64 1.2.1 377.00 267.00 644.00 OK
r-devel-windows-ix86+x86_64-gcc8 1.2.1 309.00 265.00 574.00 NOTE
r-patched-linux-x86_64 1.2.1 112.46 141.25 253.71 OK
r-patched-solaris-x86 1.2.1 275.10 ERROR
r-release-linux-x86_64 1.2.1 116.34 141.98 258.32 OK
r-release-windows-ix86+x86_64 1.2.1 369.00 243.00 612.00 OK
r-release-osx-x86_64 1.2.1 NOTE
r-oldrel-windows-ix86+x86_64 1.2.1 343.00 241.00 584.00 OK
r-oldrel-osx-x86_64 1.2.1 NOTE

Check Details

Version: 1.2.1
Check: installed package size
Result: NOTE
     installed size is 9.0Mb
     sub-directories of 1Mb or more:
     doc 1.8Mb
     libs 6.2Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-ix86+x86_64-gcc8, r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 1.2.1
Check: examples
Result: ERROR
    Running examples in ‘NetRep-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: permutationTest
    > ### Title: Permutation test P-values for module preservation statistics
    > ### Aliases: permutationTest permutation permuted
    > ### Keywords: internal
    >
    > ### ** Examples
    >
    > data("NetRep")
    >
    > # Set up input lists for each input matrix type across datasets. The list
    > # elements can have any names, so long as they are consistent between the
    > # inputs.
    > network_list <- list(discovery=discovery_network, test=test_network)
    > data_list <- list(discovery=discovery_data, test=test_data)
    > correlation_list <- list(discovery=discovery_correlation, test=test_correlation)
    > labels_list <- list(discovery=module_labels)
    >
    > # Note that we recommend running at least 10,000 permutations to make sure
    > # that the null distributions are representative.
    >
    > preservation <- modulePreservation(
    + network=network_list, data=data_list, correlation=correlation_list,
    + moduleAssignments=labels_list, nPerm=1000, discovery="discovery",
    + test="test"
    + )
    [2020-01-17 10:34:29 GMT] Validating user input...
    [2020-01-17 10:34:30 GMT] Checking matrices for problems...
    [2020-01-17 10:34:30 GMT] Input ok!
    [2020-01-17 10:34:30 GMT] Calculating preservation of network subsets from
     dataset "discovery" in dataset "test".
    [2020-01-17 10:34:30 GMT] Pre-computing network properties in dataset
     "discovery"...
    [2020-01-17 10:34:30 GMT] Calculating observed test statistics...
    [2020-01-17 10:34:30 GMT] Generating null distributions from 1000
     permutations using 15 threads...
    
    
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     *** caught segfault ***
    address 93b9ff5f, cause 'memory not mapped'
    
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Flavor: r-patched-solaris-x86

Version: 1.2.1
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘NetRep.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    
     *** caught segfault ***
    address 703c0b26, cause 'memory not mapped'
Flavor: r-patched-solaris-x86