CRAN Package Check Results for Package RcppArmadillo

Last updated on 2018-06-24 22:49:34 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.8.500.0 30.07 203.49 233.56 WARN
r-devel-linux-x86_64-debian-gcc 0.8.500.0 28.69 153.24 181.93 WARN
r-devel-linux-x86_64-fedora-clang 0.8.500.0 306.36 ERROR
r-devel-linux-x86_64-fedora-gcc 0.8.500.0 282.64 ERROR
r-devel-windows-ix86+x86_64 0.8.500.0 112.00 602.00 714.00 NOTE
r-patched-linux-x86_64 0.8.500.0 35.37 207.26 242.63 WARN
r-patched-solaris-x86 0.8.500.0 456.70 NOTE
r-release-linux-x86_64 0.8.500.0 36.75 209.79 246.54 WARN
r-release-windows-ix86+x86_64 0.8.500.0 115.00 733.00 848.00 NOTE
r-release-osx-x86_64 0.8.500.0 ERROR
r-oldrel-windows-ix86+x86_64 0.8.500.0 107.00 499.00 606.00 NOTE
r-oldrel-osx-x86_64 0.8.500.0 ERROR

Additional issues

clang-ASAN

Check Details

Version: 0.8.500.0
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    ! LaTeX Error: Lonely \item--perhaps a missing list environment.
    
    Error: processing vignette ‘RcppArmadillo-sparseMatrix.Rmd’ failed with diagnostics:
    Failed to compile RcppArmadillo-sparseMatrix.tex. See RcppArmadillo-sparseMatrix.log for more info.
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.8.500.0
Check: installed package size
Result: NOTE
     installed size is 7.8Mb
     sub-directories of 1Mb or more:
     include 5.4Mb
     libs 1.4Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-ix86+x86_64, r-patched-solaris-x86, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 0.8.500.0
Check: tests
Result: ERROR
     Running ‘doRUnit.R’ [198s/225s]
    Running the tests in ‘tests/doRUnit.R’ failed.
    Complete output:
     > # Copyright (C) 2010 - 2013 Dirk Eddelbuettel, Romain Francois and Douglas Bates
     > # Copyright (C) 2014 - 2017 Dirk Eddelbuettel
     > # Earlier copyrights Gregor Gorjanc, Martin Maechler and Murray Stokely as detailed below
     > #
     > # This file is part of RcppArmadillo.
     > #
     > # RcppArmadillo is free software: you can redistribute it and/or
     > # modify it under the terms of the GNU General Public License as
     > # published by the Free Software Foundation, either version 2 of the
     > # License, or (at your option) any later version.
     > #
     > # RcppArmadillo is distributed in the hope that it will be useful, but
     > # WITHOUT ANY WARRANTY; without even the implied warranty of
     > # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
     > # General Public License for more details.
     > #
     > # You should have received a copy of the GNU General Public License
     > # along with RcppArmadillo. If not, see <http://www.gnu.org/licenses/>.
     >
     > ## doRUnit.R --- Run RUnit tests
     > ##
     > ## with credits to package fUtilities in RMetrics
     > ## which credits Gregor Gojanc's example in CRAN package 'gdata'
     > ## as per the R Wiki http://wiki.r-project.org/rwiki/doku.php?id=developers:runit
     > ## and changed further by Martin Maechler
     > ## and more changes by Murray Stokely in HistogramTools
     > ## and then used adapted in RProtoBuf
     > ## and now used in Rcpp and here
     > ##
     > ## Dirk Eddelbuettel, Feb - June 2014
     >
     > if (requireNamespace("RUnit", quietly=TRUE) &&
     + requireNamespace("RcppArmadillo", quietly=TRUE)) {
     +
     + library(RUnit)
     + library(RcppArmadillo)
     +
     + ## Define tests
     + testSuite <- defineTestSuite(name="RcppArmadillo Unit Tests",
     + dirs=system.file("unitTests", package = "RcppArmadillo"),
     + testFuncRegexp = "^[Tt]est.+")
     +
     + Sys.setenv("R_TESTS"="") # without this, we get (or used to get) unit test failures
     +
     + tests <- runTestSuite(testSuite) # run tests
     + printTextProtocol(tests) # print results
     +
     + ## Return success or failure to R CMD CHECK
     + if (getErrors(tests)$nFail > 0) stop("TEST FAILED!")
     + if (getErrors(tests)$nErr > 0) stop("TEST HAD ERRORS!")
     + if (getErrors(tests)$nTestFunc < 1) stop("NO TEST FUNCTIONS RUN!")
     + }
    
    
     Executing test function test.armadillo.as_vector ... done successfully.
    
    
    
     Executing test function test.armadillo.mat.const ... done successfully.
    
    
    
     Executing test function test.armadillo.mat.const.ref ... done successfully.
    
    
    
     Executing test function test.armadillo.mat.plain ... done successfully.
    
    
    
     Executing test function test.armadillo.mat.ref ... done successfully.
    
    
    
     Executing test function test.armadillo.sugar.ctor ... done successfully.
    
    
    
     Executing test function test.armadillo.sugar.matrix.ctor ... done successfully.
    
    
    
     Executing test function test.armadillo.unsigned.as ... done successfully.
    
    
    
     Executing test function test.armadillo.vec.const ... done successfully.
    
    
    
     Executing test function test.armadillo.vec.const.ref ... done successfully.
    
    
    
     Executing test function test.armadillo.vec.plain ... done successfully.
    
    
    
     Executing test function test.armadillo.vec.ref ... done successfully.
    
    
    
     Executing test function test.as.Col ... done successfully.
    
    
    
     Executing test function test.as.Mat ... done successfully.
    
    
    
     Executing test function test.as.Row ... done successfully.
    
    
    
     Executing test function test.cxmat ... done successfully.
    
    
    
     Executing test function test.mtGlue ... done successfully.
    
    
    
     Executing test function test.mtOp ... done successfully.
    
    
    
     Executing test function test.sugar ... done successfully.
    
    
    
     Executing test function test.sugar.cplx ... done successfully.
    
    
    
     Executing test function test.wrap.Glue ... done successfully.
    
    
    
     Executing test function test.wrap.Op ... done successfully.
    
    
    
     Executing test function test.wrap.R ... done successfully.
    
    
    
     Executing test function test.Rlapack ... done successfully.
    
    
    
     Executing test function test.complex ... done successfully.
    
    
    
     Executing test function test.cube ... done successfully.
    
    
    
     Executing test function test.fastLm ... done successfully.
    
    
    
     Executing test function test.fastLm.default ... done successfully.
    
    
    
     Executing test function test.fastLm.formula ... done successfully.
    
    
    
     Executing test function test.summary.fastLm ... done successfully.
    
    
    
     Executing test function test.rmultinom ... Error in rmultinom(n, size, prob) : NA in probability vector
     Error in rmultinomC(n, size, prob) : NAs not allowed in probability
     Error in rmultinom(n, size, prob) : no positive probabilities
     Error in rmultinomC(n, size, prob) : Not enough positive probabilities
     done successfully.
    
    
    
     Executing test function test.randi ... done successfully.
    
    
    
     Executing test function test.randi.seed ... done successfully.
    
    
    
     Executing test function test.randn ... done successfully.
    
    
    
     Executing test function test.randn.seed ... done successfully.
    
    
    
     Executing test function test.randu ... done successfully.
    
    
    
     Executing test function test.randu.seed ... done successfully.
    
    
    
     Executing test function test.sample ... done successfully.
    
    
    
     Executing test function test.coo2dgt ... done successfully.
    
    
    
     Executing test function test.csc2dgc ... Timing stopped at: 0.017 0.001 0.031
     Error : $ operator not defined for this S4 class
     done successfully.
    
    
    
     Executing test function test.csr2dgr ... done successfully.
    
    
    
     Executing test function test.other ... Error : Only CSC, COO and CSR matrices from SciPy are supported.
     done successfully.
    
    
    
     Executing test function test.as.sparse ... done successfully.
    
    
    
     Executing test function test.sparse.addition ... done successfully.
    
    
    
     Executing test function test.sparse.fromTriplet ... done successfully.
    
    
    
     Executing test function test.sparse.iterators ... done successfully.
    
    
    
     Executing test function test.sparse.list ... done successfully.
    
    
    
     Executing test function test.sparse.multiplication ... done successfully.
    
    
    
     Executing test function test.sparse.sqrt ... done successfully.
    
    
    
     Executing test function test.sparse.square ... done successfully.
    
    
    
     Executing test function test.sparse.transpose ... done successfully.
    
    
    
     Executing test function test.speye ... done successfully.
    
    
    
     Executing test function test.as.ddi2dgc ... done successfully.
    
    
    
     Executing test function test.as.dgc2dgc ... dimnames(.) <- NULL: translated to
     dimnames(.) <- list(NULL,NULL) <==> unname(.)
     dimnames(.) <- NULL: translated to
     dimnames(.) <- list(NULL,NULL) <==> unname(.)
     done successfully.
    
    
    
     Executing test function test.as.dgr2dgc ... done successfully.
    
    
    
     Executing test function test.as.dgt2dgc ... done successfully.
    
    
    
     Executing test function test.as.dsc2dgc ... done successfully.
    
    
    
     Executing test function test.as.dsr2dgc ... done successfully.
    
    
    
     Executing test function test.as.dst2dgc ... done successfully.
    
    
    
     Executing test function test.as.dtc2dgc ... done successfully.
    
    
    
     Executing test function test.as.dtr2dgc ... done successfully.
    
    
    
     Executing test function test.as.dtt2dgc ... done successfully.
    
    
    
     Executing test function test.as.ind2dgc ... done successfully.
    
    
    
     Executing test function test.as.p2dgc ... done successfully.
    
    
    
     Executing test function test.stop ...
     *** caught segfault ***
     address 0x71, cause 'memory not mapped'
    
     Traceback:
     1: .Call(<pointer: 0x7f73bc8d3a80>, S)
     2: asSpMat(lm)
     3: eval(expr, envir = parent.frame())
     4: doTryCatch(return(expr), name, parentenv, handler)
     5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
     6: tryCatchList(expr, classes, parentenv, handlers)
     7: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call)[1L] prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
     8: try(eval(expr, envir = parent.frame()), silent = silent)
     9: checkException(asSpMat(lm))
     10: func()
     11: system.time(func(), gcFirst = RUnitEnv$.gcBeforeTest)
     12: doTryCatch(return(expr), name, parentenv, handler)
     13: tryCatchOne(expr, names, parentenv, handlers[[1L]])
     14: tryCatchList(expr, classes, parentenv, handlers)
     15: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call)[1L] prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
     16: try(system.time(func(), gcFirst = RUnitEnv$.gcBeforeTest))
     17: .executeTestCase(funcName, envir = sandbox, setUpFunc = .setUp, tearDownFunc = .tearDown)
     18: .sourceTestFile(testFile, testSuite$testFuncRegexp)
     19: runTestSuite(testSuite)
     An irrecoverable exception occurred. R is aborting now ...
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 0.8.500.0
Check: tests
Result: ERROR
     Running ‘doRUnit.R’ [181s/210s]
    Running the tests in ‘tests/doRUnit.R’ failed.
    Complete output:
     > # Copyright (C) 2010 - 2013 Dirk Eddelbuettel, Romain Francois and Douglas Bates
     > # Copyright (C) 2014 - 2017 Dirk Eddelbuettel
     > # Earlier copyrights Gregor Gorjanc, Martin Maechler and Murray Stokely as detailed below
     > #
     > # This file is part of RcppArmadillo.
     > #
     > # RcppArmadillo is free software: you can redistribute it and/or
     > # modify it under the terms of the GNU General Public License as
     > # published by the Free Software Foundation, either version 2 of the
     > # License, or (at your option) any later version.
     > #
     > # RcppArmadillo is distributed in the hope that it will be useful, but
     > # WITHOUT ANY WARRANTY; without even the implied warranty of
     > # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
     > # General Public License for more details.
     > #
     > # You should have received a copy of the GNU General Public License
     > # along with RcppArmadillo. If not, see <http://www.gnu.org/licenses/>.
     >
     > ## doRUnit.R --- Run RUnit tests
     > ##
     > ## with credits to package fUtilities in RMetrics
     > ## which credits Gregor Gojanc's example in CRAN package 'gdata'
     > ## as per the R Wiki http://wiki.r-project.org/rwiki/doku.php?id=developers:runit
     > ## and changed further by Martin Maechler
     > ## and more changes by Murray Stokely in HistogramTools
     > ## and then used adapted in RProtoBuf
     > ## and now used in Rcpp and here
     > ##
     > ## Dirk Eddelbuettel, Feb - June 2014
     >
     > if (requireNamespace("RUnit", quietly=TRUE) &&
     + requireNamespace("RcppArmadillo", quietly=TRUE)) {
     +
     + library(RUnit)
     + library(RcppArmadillo)
     +
     + ## Define tests
     + testSuite <- defineTestSuite(name="RcppArmadillo Unit Tests",
     + dirs=system.file("unitTests", package = "RcppArmadillo"),
     + testFuncRegexp = "^[Tt]est.+")
     +
     + Sys.setenv("R_TESTS"="") # without this, we get (or used to get) unit test failures
     +
     + tests <- runTestSuite(testSuite) # run tests
     + printTextProtocol(tests) # print results
     +
     + ## Return success or failure to R CMD CHECK
     + if (getErrors(tests)$nFail > 0) stop("TEST FAILED!")
     + if (getErrors(tests)$nErr > 0) stop("TEST HAD ERRORS!")
     + if (getErrors(tests)$nTestFunc < 1) stop("NO TEST FUNCTIONS RUN!")
     + }
    
    
     Executing test function test.armadillo.as_vector ... done successfully.
    
    
    
     Executing test function test.armadillo.mat.const ... done successfully.
    
    
    
     Executing test function test.armadillo.mat.const.ref ... done successfully.
    
    
    
     Executing test function test.armadillo.mat.plain ... done successfully.
    
    
    
     Executing test function test.armadillo.mat.ref ... done successfully.
    
    
    
     Executing test function test.armadillo.sugar.ctor ... done successfully.
    
    
    
     Executing test function test.armadillo.sugar.matrix.ctor ... done successfully.
    
    
    
     Executing test function test.armadillo.unsigned.as ... done successfully.
    
    
    
     Executing test function test.armadillo.vec.const ... done successfully.
    
    
    
     Executing test function test.armadillo.vec.const.ref ... done successfully.
    
    
    
     Executing test function test.armadillo.vec.plain ... done successfully.
    
    
    
     Executing test function test.armadillo.vec.ref ... done successfully.
    
    
    
     Executing test function test.as.Col ... done successfully.
    
    
    
     Executing test function test.as.Mat ... done successfully.
    
    
    
     Executing test function test.as.Row ... done successfully.
    
    
    
     Executing test function test.cxmat ... done successfully.
    
    
    
     Executing test function test.mtGlue ... done successfully.
    
    
    
     Executing test function test.mtOp ... done successfully.
    
    
    
     Executing test function test.sugar ... done successfully.
    
    
    
     Executing test function test.sugar.cplx ... done successfully.
    
    
    
     Executing test function test.wrap.Glue ... done successfully.
    
    
    
     Executing test function test.wrap.Op ... done successfully.
    
    
    
     Executing test function test.wrap.R ... done successfully.
    
    
    
     Executing test function test.Rlapack ... done successfully.
    
    
    
     Executing test function test.complex ... done successfully.
    
    
    
     Executing test function test.cube ... done successfully.
    
    
    
     Executing test function test.fastLm ... done successfully.
    
    
    
     Executing test function test.fastLm.default ... done successfully.
    
    
    
     Executing test function test.fastLm.formula ... done successfully.
    
    
    
     Executing test function test.summary.fastLm ... done successfully.
    
    
    
     Executing test function test.rmultinom ... Error in rmultinom(n, size, prob) : NA in probability vector
     Error in rmultinomC(n, size, prob) : NAs not allowed in probability
     Error in rmultinom(n, size, prob) : no positive probabilities
     Error in rmultinomC(n, size, prob) : Not enough positive probabilities
     done successfully.
    
    
    
     Executing test function test.randi ... done successfully.
    
    
    
     Executing test function test.randi.seed ... done successfully.
    
    
    
     Executing test function test.randn ... done successfully.
    
    
    
     Executing test function test.randn.seed ... done successfully.
    
    
    
     Executing test function test.randu ... done successfully.
    
    
    
     Executing test function test.randu.seed ... done successfully.
    
    
    
     Executing test function test.sample ... done successfully.
    
    
    
     Executing test function test.coo2dgt ... done successfully.
    
    
    
     Executing test function test.csc2dgc ... Timing stopped at: 0.015 0.004 0.019
     Error : $ operator not defined for this S4 class
     done successfully.
    
    
    
     Executing test function test.csr2dgr ... done successfully.
    
    
    
     Executing test function test.other ... Error : Only CSC, COO and CSR matrices from SciPy are supported.
     done successfully.
    
    
    
     Executing test function test.as.sparse ... In file included from /data/gannet/ripley/R/packages/tests-devel/RcppArmadillo.Rcheck/RcppArmadillo/include/RcppArmadillo.h:39:0,
     from sparse.cpp:23:
     /data/gannet/ripley/R/packages/tests-devel/RcppArmadillo.Rcheck/RcppArmadillo/include/RcppArmadilloSugar.h: In instantiation of ‘Rcpp::List Rcpp::simple_triplet_matrix(const arma::SpMat<eT>&) [with T = double; Rcpp::List = Rcpp::Vector<19>]’:
     sparse.cpp:31:65: required from here
     /data/gannet/ripley/R/packages/tests-devel/RcppArmadillo.Rcheck/RcppArmadillo/include/RcppArmadilloSugar.h:43:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for (int cp=1, ie=0; ie < sm.n_nonzero; ie++) {
     ~~~^~~~~~~~~~~~~~
     /data/gannet/ripley/R/packages/tests-devel/RcppArmadillo.Rcheck/RcppArmadillo/include/RcppArmadilloSugar.h:44:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for (; p[cp] <= ie && cp < sm.n_cols; cp++)
     ~~~^~~~~~~~~~~
     done successfully.
    
    
    
     Executing test function test.sparse.addition ... done successfully.
    
    
    
     Executing test function test.sparse.fromTriplet ... done successfully.
    
    
    
     Executing test function test.sparse.iterators ... done successfully.
    
    
    
     Executing test function test.sparse.list ... done successfully.
    
    
    
     Executing test function test.sparse.multiplication ... done successfully.
    
    
    
     Executing test function test.sparse.sqrt ... done successfully.
    
    
    
     Executing test function test.sparse.square ... done successfully.
    
    
    
     Executing test function test.sparse.transpose ... done successfully.
    
    
    
     Executing test function test.speye ... done successfully.
    
    
    
     Executing test function test.as.ddi2dgc ... done successfully.
    
    
    
     Executing test function test.as.dgc2dgc ... dimnames(.) <- NULL: translated to
     dimnames(.) <- list(NULL,NULL) <==> unname(.)
     dimnames(.) <- NULL: translated to
     dimnames(.) <- list(NULL,NULL) <==> unname(.)
     done successfully.
    
    
    
     Executing test function test.as.dgr2dgc ... done successfully.
    
    
    
     Executing test function test.as.dgt2dgc ... done successfully.
    
    
    
     Executing test function test.as.dsc2dgc ... done successfully.
    
    
    
     Executing test function test.as.dsr2dgc ... done successfully.
    
    
    
     Executing test function test.as.dst2dgc ... done successfully.
    
    
    
     Executing test function test.as.dtc2dgc ... done successfully.
    
    
    
     Executing test function test.as.dtr2dgc ... done successfully.
    
    
    
     Executing test function test.as.dtt2dgc ... done successfully.
    
    
    
     Executing test function test.as.ind2dgc ... done successfully.
    
    
    
     Executing test function test.as.p2dgc ... done successfully.
    
    
    
     Executing test function test.stop ... Error in asSpMat(lm) : lgCMatrix is not supported.
     In addition: Warning message:
     In library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
     there is no package called 'slam'
     Error in asSpMat(L) : lgTMatrix is not supported.
     dimnames(.) <- NULL: translated to
     dimnames(.) <- list(NULL,NULL) <==> unname(.)
     Error in asSpMat(nm) : ngCMatrix is not supported.
     Error in asSpMat(ngt) : ngTMatrix is not supported.
     Error in asSpMat(nM) : ntTMatrix is not supported.
     Error in asSpMat(nsc) : nsCMatrix is not supported.
     Error in asSpMat(ldi) : ldiMatrix is not supported.
     done successfully.
    
     RUNIT TEST PROTOCOL -- Wed Jun 13 10:59:26 2018
     ***********************************************
     Number of test functions: 65
     Number of errors: 1
     Number of failures: 0
    
    
     1 Test Suite :
     RcppArmadillo Unit Tests - 65 test functions, 1 error, 0 failures
     ERROR in test.csc2dgc: Error : $ operator not defined for this S4 class
    
    
    
     Details
     ***************************
     Test Suite: RcppArmadillo Unit Tests
     Test function regexp: ^[Tt]est.+
     Test file regexp: ^runit.+\.[rR]$
     Involved directory:
     /data/gannet/ripley/R/packages/tests-devel/RcppArmadillo.Rcheck/RcppArmadillo/unitTests
     ---------------------------
     Test file: /data/gannet/ripley/R/packages/tests-devel/RcppArmadillo.Rcheck/RcppArmadillo/unitTests/runit.RcppArmadillo.R
     test.armadillo.as_vector: (6 checks) ... OK (0 seconds)
     test.armadillo.mat.const: (1 checks) ... OK (0 seconds)
     test.armadillo.mat.const.ref: (1 checks) ... OK (0 seconds)
     test.armadillo.mat.plain: (1 checks) ... OK (0 seconds)
     test.armadillo.mat.ref: (1 checks) ... OK (0 seconds)
     test.armadillo.sugar.ctor: (1 checks) ... OK (0 seconds)
     test.armadillo.sugar.matrix.ctor: (1 checks) ... OK (0 seconds)
     test.armadillo.unsigned.as: (8 checks) ... OK (0 seconds)
     test.armadillo.vec.const: (1 checks) ... OK (0 seconds)
     test.armadillo.vec.const.ref: (1 checks) ... OK (0 seconds)
     test.armadillo.vec.plain: (1 checks) ... OK (0 seconds)
     test.armadillo.vec.ref: (1 checks) ... OK (0 seconds)
     test.as.Col: (1 checks) ... OK (0 seconds)
     test.as.Mat: (1 checks) ... OK (0 seconds)
     test.as.Row: (1 checks) ... OK (0 seconds)
     test.cxmat: (1 checks) ... OK (0 seconds)
     test.mtGlue: (1 checks) ... OK (0 seconds)
     test.mtOp: (1 checks) ... OK (0 seconds)
     test.sugar: (1 checks) ... OK (0 seconds)
     test.sugar.cplx: (1 checks) ... OK (0 seconds)
     test.wrap.Glue: (1 checks) ... OK (0 seconds)
     test.wrap.Op: (1 checks) ... OK (0 seconds)
     test.wrap.R: (10 checks) ... OK (0 seconds)
     ---------------------------
     Test file: /data/gannet/ripley/R/packages/tests-devel/RcppArmadillo.Rcheck/RcppArmadillo/unitTests/runit.Rlapack.R
     test.Rlapack: (6 checks) ... OK (0 seconds)
     ---------------------------
     Test file: /data/gannet/ripley/R/packages/tests-devel/RcppArmadillo.Rcheck/RcppArmadillo/unitTests/runit.complex.R
     test.complex: (11 checks) ... OK (0 seconds)
     ---------------------------
     Test file: /data/gannet/ripley/R/packages/tests-devel/RcppArmadillo.Rcheck/RcppArmadillo/unitTests/runit.cube.R
     test.cube: (18 checks) ... OK (0.12 seconds)
     ---------------------------
     Test file: /data/gannet/ripley/R/packages/tests-devel/RcppArmadillo.Rcheck/RcppArmadillo/unitTests/runit.fastLm.R
     test.fastLm: (3 checks) ... OK (0.02 seconds)
     test.fastLm.default: (5 checks) ... OK (0.01 seconds)
     test.fastLm.formula: (5 checks) ... OK (0.01 seconds)
     test.summary.fastLm: (12 checks) ... OK (0.04 seconds)
     ---------------------------
     Test file: /data/gannet/ripley/R/packages/tests-devel/RcppArmadillo.Rcheck/RcppArmadillo/unitTests/runit.rmultinom.R
     test.rmultinom: (9 checks) ... OK (0.01 seconds)
     ---------------------------
     Test file: /data/gannet/ripley/R/packages/tests-devel/RcppArmadillo.Rcheck/RcppArmadillo/unitTests/runit.rng.R
     test.randi: (2 checks) ... OK (0 seconds)
     test.randi.seed: (1 checks) ... OK (0 seconds)
     test.randn: (3 checks) ... OK (0 seconds)
     test.randn.seed: (1 checks) ... OK (0.02 seconds)
     test.randu: (2 checks) ... OK (0 seconds)
     test.randu.seed: (1 checks) ... OK (0.02 seconds)
     ---------------------------
     Test file: /data/gannet/ripley/R/packages/tests-devel/RcppArmadillo.Rcheck/RcppArmadillo/unitTests/runit.sample.R
     test.sample: (21 checks) ... OK (0.11 seconds)
     ---------------------------
     Test file: /data/gannet/ripley/R/packages/tests-devel/RcppArmadillo.Rcheck/RcppArmadillo/unitTests/runit.scipy2r.R
     test.coo2dgt: (1 checks) ... OK (0.05 seconds)
     test.csc2dgc: ERROR !!
     Error : $ operator not defined for this S4 class
     test.csr2dgr: (1 checks) ... OK (0.04 seconds)
     test.other: (1 checks) ... OK (0.02 seconds)
     ---------------------------
     Test file: /data/gannet/ripley/R/packages/tests-devel/RcppArmadillo.Rcheck/RcppArmadillo/unitTests/runit.sparse.R
     test.as.sparse: (1 checks) ... OK (0 seconds)
     test.sparse.addition: (1 checks) ... OK (0.01 seconds)
     test.sparse.fromTriplet: (1 checks) ... OK (0.01 seconds)
     test.sparse.iterators: (1 checks) ... OK (0.02 seconds)
     test.sparse.list: (1 checks) ... OK (0 seconds)
     test.sparse.multiplication: (1 checks) ... OK (0 seconds)
     test.sparse.sqrt: (1 checks) ... OK (0 seconds)
     test.sparse.square: (1 checks) ... OK (0 seconds)
     test.sparse.transpose: (1 checks) ... OK (0 seconds)
     test.speye: (3 checks) ... OK (0.02 seconds)
     ---------------------------
     Test file: /data/gannet/ripley/R/packages/tests-devel/RcppArmadillo.Rcheck/RcppArmadillo/unitTests/runit.sparseConversion.R
     test.as.ddi2dgc: (8 checks) ... OK (0.1 seconds)
     test.as.dgc2dgc: (14 checks) ... OK (0.06 seconds)
     test.as.dgr2dgc: (5 checks) ... OK (0.03 seconds)
     test.as.dgt2dgc: (18 checks) ... OK (0.17 seconds)
     test.as.dsc2dgc: (8 checks) ... OK (0.06 seconds)
     test.as.dsr2dgc: (4 checks) ... OK (0.04 seconds)
     test.as.dst2dgc: (2 checks) ... OK (0.02 seconds)
     test.as.dtc2dgc: (5 checks) ... OK (0.06 seconds)
     test.as.dtr2dgc: (4 checks) ... OK (0.05 seconds)
     test.as.dtt2dgc: (4 checks) ... OK (0.06 seconds)
     test.as.ind2dgc: (9 checks) ... OK (0.11 seconds)
     test.as.p2dgc: (5 checks) ... OK (0.04 seconds)
     test.stop: (7 checks) ... OK (0.05 seconds)
     Error: TEST HAD ERRORS!
     Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 0.8.500.0
Check: tests
Result: ERROR
     Running ‘doRUnit.R’ [133s/134s]
    Running the tests in ‘tests/doRUnit.R’ failed.
    Last 13 lines of output:
     test.as.dgr2dgc: (5 checks) ... OK (0.01 seconds)
     test.as.dgt2dgc: (18 checks) ... OK (0.09 seconds)
     test.as.dsc2dgc: (8 checks) ... OK (0.03 seconds)
     test.as.dsr2dgc: (4 checks) ... OK (0.03 seconds)
     test.as.dst2dgc: (2 checks) ... OK (0.01 seconds)
     test.as.dtc2dgc: (5 checks) ... OK (0.02 seconds)
     test.as.dtr2dgc: (4 checks) ... OK (0.02 seconds)
     test.as.dtt2dgc: (4 checks) ... OK (0.03 seconds)
     test.as.ind2dgc: (9 checks) ... OK (0.05 seconds)
     test.as.p2dgc: (5 checks) ... OK (0.02 seconds)
     test.as.stm2dgc: (1 checks) ... OK (0 seconds)
     test.as.stm2stm: (1 checks) ... OK (0 seconds)
     test.stop: (7 checks) ... OK (0.04 seconds)
     Error: TEST HAD ERRORS!
     Execution halted
Flavor: r-release-osx-x86_64

Version: 0.8.500.0
Check: running R code from vignettes
Result: ERROR
    Errors in running code in vignettes:
    when running code in ‘RcppArmadillo-unitTests.Rnw’
     ...
    
    > if (err$nFail > 0) stop(sprintf("unit test problems: %d failures",
    + err$nFail))
    
    > if (err$nErr > 0) stop(sprintf("unit test problems: %d errors",
    + err$nErr))
    
     When sourcing ‘RcppArmadillo-unitTests.R’:
    Error: unit test problems: 1 errors
    Execution halted
Flavors: r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 0.8.500.0
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    Error in rmultinom(n, size, prob) : NA in probability vector
    Error in rmultinomC(n, size, prob) : c++ exception (unknown reason)
    Error in rmultinom(n, size, prob) : no positive probabilities
    Error in rmultinomC(n, size, prob) : c++ exception (unknown reason)
    Timing stopped at: 0.01 0 0.009
    Error : $ operator not defined for this S4 class
    Error : Only CSC, COO and CSR matrices from SciPy are supported.
    dimnames(.) <- NULL: translated to
    dimnames(.) <- list(NULL,NULL) <==> unname(.)
    dimnames(.) <- NULL: translated to
    dimnames(.) <- list(NULL,NULL) <==> unname(.)
    Error in asSpMat(lm) : lgCMatrix is not supported.
    Error in asSpMat(L) : lgTMatrix is not supported.
    dimnames(.) <- NULL: translated to
    dimnames(.) <- list(NULL,NULL) <==> unname(.)
    Error in asSpMat(nm) : ngCMatrix is not supported.
    Error in asSpMat(ngt) : ngTMatrix is not supported.
    Error in asSpMat(nM) : ntTMatrix is not supported.
    Error in asSpMat(nsc) : nsCMatrix is not supported.
    Error in asSpMat(ldi) : ldiMatrix is not supported.
    
    Error: processing vignette 'RcppArmadillo-unitTests.Rnw' failed with diagnostics:
     chunk 2 (label = unitTesting)
    Error in eval(expr, .GlobalEnv) : unit test problems: 1 errors
    Execution halted
Flavor: r-release-osx-x86_64

Version: 0.8.500.0
Check: tests
Result: ERROR
     Running ‘doRUnit.R’ [100s/101s]
    Running the tests in ‘tests/doRUnit.R’ failed.
    Last 13 lines of output:
     test.as.dgr2dgc: (5 checks) ... OK (0.01 seconds)
     test.as.dgt2dgc: (18 checks) ... OK (0.11 seconds)
     test.as.dsc2dgc: (8 checks) ... OK (0.16 seconds)
     test.as.dsr2dgc: (4 checks) ... OK (0.03 seconds)
     test.as.dst2dgc: (2 checks) ... OK (0.01 seconds)
     test.as.dtc2dgc: (5 checks) ... OK (0.07 seconds)
     test.as.dtr2dgc: (4 checks) ... OK (0.02 seconds)
     test.as.dtt2dgc: (4 checks) ... OK (0.04 seconds)
     test.as.ind2dgc: (9 checks) ... OK (0.05 seconds)
     test.as.p2dgc: (5 checks) ... OK (0.02 seconds)
     test.as.stm2dgc: (1 checks) ... OK (0 seconds)
     test.as.stm2stm: (1 checks) ... OK (0.02 seconds)
     test.stop: (7 checks) ... OK (0.05 seconds)
     Error: TEST HAD ERRORS!
     Execution halted
Flavor: r-oldrel-osx-x86_64

Version: 0.8.500.0
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Timing stopped at: 0.009 0 0.009
    Error in spmat$getformat : $ operator not defined for this S4 class
    Error : Only CSC, COO and CSR matrices from SciPy are supported.
    dimnames(.) <- NULL: translated to
    dimnames(.) <- list(NULL,NULL) <==> unname(.)
    dimnames(.) <- NULL: translated to
    dimnames(.) <- list(NULL,NULL) <==> unname(.)
    Error in asSpMat(lm) : lgCMatrix is not supported.
    Error in asSpMat(L) : lgTMatrix is not supported.
    dimnames(.) <- NULL: translated to
    dimnames(.) <- list(NULL,NULL) <==> unname(.)
    Error in asSpMat(nm) : ngCMatrix is not supported.
    Error in asSpMat(ngt) : ngTMatrix is not supported.
    Error in asSpMat(nM) : ntTMatrix is not supported.
    Error in asSpMat(nsc) : nsCMatrix is not supported.
    Error in asSpMat(ldi) : ldiMatrix is not supported.
    
    Error: processing vignette 'RcppArmadillo-unitTests.Rnw' failed with diagnostics:
     chunk 2 (label = unitTesting)
    Error in eval(expr, .GlobalEnv) : unit test problems: 1 errors
    Execution halted
Flavor: r-oldrel-osx-x86_64