CRAN Package Check Results for Package bayes4psy

Last updated on 2020-02-17 22:49:25 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.2.0 478.15 973.30 1451.45 NOTE
r-devel-linux-x86_64-debian-gcc 1.2.0 453.53 608.84 1062.37 ERROR
r-devel-linux-x86_64-fedora-clang 1.2.0 1822.44 NOTE
r-devel-linux-x86_64-fedora-gcc 1.2.0 1927.32 NOTE
r-devel-windows-ix86+x86_64 1.2.0 814.00 978.00 1792.00 ERROR
r-devel-windows-ix86+x86_64-gcc8 1.2.0 1156.00 1120.00 2276.00 NOTE
r-patched-linux-x86_64 1.2.0 473.62 854.06 1327.68 NOTE
r-patched-solaris-x86 1.2.0 2272.40 NOTE
r-release-linux-x86_64 1.2.0 459.51 841.72 1301.23 WARN
r-release-windows-ix86+x86_64 1.2.0 795.00 919.00 1714.00 ERROR
r-release-osx-x86_64 1.2.0 NOTE
r-oldrel-windows-ix86+x86_64 1.2.0 808.00 956.00 1764.00 NOTE
r-oldrel-osx-x86_64 1.2.0 NOTE

Check Details

Version: 1.2.0
Check: for GNU extensions in Makefiles
Result: NOTE
    GNU make is a SystemRequirements.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-devel-windows-ix86+x86_64-gcc8, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 1.2.0
Check: tests
Result: ERROR
     Running ‘testthat.R’ [78s/117s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(bayes4psy)
     Loading required package: Rcpp
     >
     > test_check("bayes4psy")
     ── 1. Error: reaction_time compare_distributions two fits ─────────────────────
     result would be too long a vector
     Backtrace:
     1. bayes4psy::compare_distributions(fit1, fit2 = fit2)
     2. bayes4psy::compare_distributions(fit1, fit2 = fit2)
     3. bayes4psy:::difference(...)
     6. mcmcse::mcse(diff_smaller)
     7. base::sapply(...)
     8. base::lapply(X = X, FUN = FUN, ...)
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     [ OK: 72 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 1 ]
     1. Error: reaction_time compare_distributions two fits
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.2.0
Check: installed package size
Result: NOTE
     installed size is 71.3Mb
     sub-directories of 1Mb or more:
     libs 69.3Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-ix86+x86_64, r-devel-windows-ix86+x86_64-gcc8, r-patched-solaris-x86, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 1.2.0
Check: dependencies in R code
Result: NOTE
    Namespace in Imports field not imported from: ‘utils’
     All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-x86, r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 1.2.0
Check: running tests for arch ‘i386’
Result: ERROR
     Running 'testthat.R' [100s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > library(testthat)
     > library(bayes4psy)
     Loading required package: Rcpp
     >
     > test_check("bayes4psy")
     -- 1. Error: reaction_time compare_distributions two fits ---------------------
     result would be too long a vector
     Backtrace:
     1. bayes4psy::compare_distributions(fit1, fit2 = fit2)
     2. bayes4psy::compare_distributions(fit1, fit2 = fit2)
     3. bayes4psy:::difference(...)
     6. mcmcse::mcse(diff_smaller)
     7. base::sapply(...)
     8. base::lapply(X = X, FUN = FUN, ...)
    
     == testthat results ===========================================================
     [ OK: 72 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 1 ]
     1. Error: reaction_time compare_distributions two fits
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-windows-ix86+x86_64

Version: 1.2.0
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘adaptation_level.Rmd’ using rmarkdown
    Loading required package: Rcpp
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Quitting from lines 88-90 (adaptation_level.Rmd)
    Error: processing vignette 'adaptation_level.Rmd' failed with diagnostics:
    result would be too long a vector
    --- failed re-building ‘adaptation_level.Rmd’
    
    --- re-building ‘afterimages.Rmd’ using rmarkdown
    Loading required package: Rcpp
    
    ********************************************************
    Note: As of version 1.0.0, cowplot does not change the
     default ggplot2 theme anymore. To recover the previous
     behavior, execute:
     theme_set(theme_cowplot())
    ********************************************************
    
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    --- finished re-building ‘afterimages.Rmd’
    
    --- re-building ‘flanker.Rmd’ using rmarkdown
    Loading required package: Rcpp
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    --- finished re-building ‘flanker.Rmd’
    
    --- re-building ‘stroop.Rmd’ using rmarkdown
    Loading required package: Rcpp
    Scale for 'fill' is already present. Adding another scale for 'fill', which will replace the existing scale.
    --- finished re-building ‘stroop.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘adaptation_level.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-release-linux-x86_64

Version: 1.2.0
Check: running tests for arch ‘i386’
Result: ERROR
     Running 'testthat.R' [85s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > library(testthat)
     > library(bayes4psy)
     Loading required package: Rcpp
     >
     > test_check("bayes4psy")
     -- 1. Error: reaction_time compare_distributions two fits ---------------------
     result would be too long a vector
     Backtrace:
     1. bayes4psy::compare_distributions(fit1, fit2 = fit2)
     2. bayes4psy::compare_distributions(fit1, fit2 = fit2)
     3. bayes4psy:::difference(...)
     6. mcmcse::mcse(diff_smaller)
     7. base::sapply(...)
     8. base::lapply(X = X, FUN = FUN, ...)
    
     == testthat results ===========================================================
     [ OK: 72 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 1 ]
     1. Error: reaction_time compare_distributions two fits
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-release-windows-ix86+x86_64

Version: 1.2.0
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building 'adaptation_level.Rmd' using rmarkdown
    Loading required package: Rcpp
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    starting worker pid=71308 on localhost:11802 at 15:39:30.440
    starting worker pid=23472 on localhost:11802 at 15:39:30.722
    
    SAMPLING FOR MODEL 'linear' NOW (CHAIN 1).
    Chain 1:
    Chain 1: Gradient evaluation took 0 seconds
    Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0 seconds.
    Chain 1: Adjust your expectations accordingly!
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    SAMPLING FOR MODEL 'linear' NOW (CHAIN 2).
    Chain 2:
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    Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0 seconds.
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    Chain 1:
    Chain 1: Elapsed Time: 1.878 seconds (Warm-up)
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    Chain 2:
    Chain 2: Elapsed Time: 3.221 seconds (Warm-up)
    Chain 2: 6.381 seconds (Sampling)
    Chain 2: 9.602 seconds (Total)
    Chain 2:
    starting worker pid=68204 on localhost:11802 at 15:39:47.363
    starting worker pid=90476 on localhost:11802 at 15:39:47.659
    
    SAMPLING FOR MODEL 'linear' NOW (CHAIN 1).
    Chain 1:
    Chain 1: Gradient evaluation took 0 seconds
    Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0 seconds.
    Chain 1: Adjust your expectations accordingly!
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    Chain 1: Iteration: 1 / 2000 [ 0%] (Warmup)
    
    SAMPLING FOR MODEL 'linear' NOW (CHAIN 2).
    Chain 2:
    Chain 2: Gradient evaluation took 0 seconds
    Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0 seconds.
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    Chain 2:
    Chain 2: Elapsed Time: 2.543 seconds (Warm-up)
    Chain 2: 5.164 seconds (Sampling)
    Chain 2: 7.707 seconds (Total)
    Chain 2:
    Chain 1: Iteration: 1900 / 2000 [ 95%] (Sampling)
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    Chain 1: Elapsed Time: 2.652 seconds (Warm-up)
    Chain 1: 5.882 seconds (Sampling)
    Chain 1: 8.534 seconds (Total)
    Chain 1:
    Quitting from lines 88-90 (adaptation_level.Rmd)
    Error: processing vignette 'adaptation_level.Rmd' failed with diagnostics:
    result would be too long a vector
    --- failed re-building 'adaptation_level.Rmd'
    
    --- re-building 'afterimages.Rmd' using rmarkdown
    Loading required package: Rcpp
    
    ********************************************************
    Note: As of version 1.0.0, cowplot does not change the
     default ggplot2 theme anymore. To recover the previous
     behavior, execute:
     theme_set(theme_cowplot())
    ********************************************************
    
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    starting worker pid=49844 on localhost:11019 at 15:40:13.668
    starting worker pid=99500 on localhost:11019 at 15:40:13.949
    
    SAMPLING FOR MODEL 'color' NOW (CHAIN 1).
    Chain 1:
    Chain 1: Gradient evaluation took 0 seconds
    Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0 seconds.
    Chain 1: Adjust your expectations accordingly!
    Chain 1:
    Chain 1:
    Chain 1: Iteration: 1 / 2000 [ 0%] (Warmup)
    
    SAMPLING FOR MODEL 'color' NOW (CHAIN 2).
    Chain 2:
    Chain 2: Gradient evaluation took 0 seconds
    Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0 seconds.
    Chain 2: Adjust your expectations accordingly!
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    Chain 1:
    Chain 1: Elapsed Time: 6.745 seconds (Warm-up)
    Chain 1: 4.368 seconds (Sampling)
    Chain 1: 11.113 seconds (Total)
    Chain 1:
    Chain 2: Iteration: 2000 / 2000 [100%] (Sampling)
    Chain 2:
    Chain 2: Elapsed Time: 5.919 seconds (Warm-up)
    Chain 2: 4.898 seconds (Sampling)
    Chain 2: 10.817 seconds (Total)
    Chain 2:
    starting worker pid=26376 on localhost:11019 at 15:40:33.127
    starting worker pid=53368 on localhost:11019 at 15:40:33.376
    
    SAMPLING FOR MODEL 'color' NOW (CHAIN 1).
    Chain 1:
    Chain 1: Gradient evaluation took 0 seconds
    Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0 seconds.
    Chain 1: Adjust your expectations accordingly!
    Chain 1:
    Chain 1:
    Chain 1: Iteration: 1 / 2000 [ 0%] (Warmup)
    
    SAMPLING FOR MODEL 'color' NOW (CHAIN 2).
    Chain 2:
    Chain 2: Gradient evaluation took 0 seconds
    Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0 seconds.
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    Chain 2:
    Chain 2: Elapsed Time: 6.723 seconds (Warm-up)
    Chain 2: 5.554 seconds (Sampling)
    Chain 2: 12.277 seconds (Total)
    Chain 2:
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    Chain 1:
    Chain 1: Elapsed Time: 6.77 seconds (Warm-up)
    Chain 1: 6.661 seconds (Sampling)
    Chain 1: 13.431 seconds (Total)
    Chain 1:
    starting worker pid=31964 on localhost:11019 at 15:40:51.129
    starting worker pid=194400 on localhost:11019 at 15:40:51.457
    
    SAMPLING FOR MODEL 'color' NOW (CHAIN 1).
    Chain 1:
    Chain 1: Gradient evaluation took 0 seconds
    Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0 seconds.
    Chain 1: Adjust your expectations accordingly!
    Chain 1:
    Chain 1:
    Chain 1: Iteration: 1 / 2000 [ 0%] (Warmup)
    
    SAMPLING FOR MODEL 'color' NOW (CHAIN 2).
    Chain 2:
    Chain 2: Gradient evaluation took 0 seconds
    Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0 seconds.
    Chain 2: Adjust your expectations accordingly!
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    Chain 1:
    Chain 1: Elapsed Time: 6.646 seconds (Warm-up)
    Chain 1: 4.773 seconds (Sampling)
    Chain 1: 11.419 seconds (Total)
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    Chain 2: Iteration: 2000 / 2000 [100%] (Sampling)
    Chain 2:
    Chain 2: Elapsed Time: 6.911 seconds (Warm-up)
    Chain 2: 5.366 seconds (Sampling)
    Chain 2: 12.277 seconds (Total)
    Chain 2:
    starting worker pid=186648 on localhost:11019 at 15:41:08.820
    starting worker pid=143324 on localhost:11019 at 15:41:09.069
    
    SAMPLING FOR MODEL 'color' NOW (CHAIN 1).
    Chain 1:
    Chain 1: Gradient evaluation took 0 seconds
    Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0 seconds.
    Chain 1: Adjust your expectations accordingly!
    Chain 1:
    Chain 1:
    Chain 1: Iteration: 1 / 2000 [ 0%] (Warmup)
    
    SAMPLING FOR MODEL 'color' NOW (CHAIN 2).
    Chain 2:
    Chain 2: Gradient evaluation took 0 seconds
    Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0 seconds.
    Chain 2: Adjust your expectations accordingly!
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    SAMPLING FOR MODEL 'color' NOW (CHAIN 1).
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    Warning: Removed 1 rows containing missing values (geom_segment).
    --- finished re-building 'afterimages.Rmd'
    
    --- re-building 'flanker.Rmd' using rmarkdown
    Loading required package: Rcpp
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
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    starting worker pid=64996 on localhost:11765 at 15:42:17.497
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    --- finished re-building 'flanker.Rmd'
    
    --- re-building 'stroop.Rmd' using rmarkdown
    Loading required package: Rcpp
    starting worker pid=45180 on localhost:11428 at 15:47:15.041
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    SAMPLING FOR MODEL 'ttest' NOW (CHAIN 1).
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    SAMPLING FOR MODEL 'ttest' NOW (CHAIN 1).
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    SAMPLING FOR MODEL 'ttest' NOW (CHAIN 1).
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    starting worker pid=104700 on localhost:11428 at 15:47:32.663
    starting worker pid=52924 on localhost:11428 at 15:47:32.991
    
    SAMPLING FOR MODEL 'ttest' NOW (CHAIN 1).
    Chain 1:
    Chain 1: Gradient evaluation took 0 seconds
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    Chain 1: Adjust your expectations accordingly!
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    SAMPLING FOR MODEL 'ttest' NOW (CHAIN 2).
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    Chain 2:
    Chain 2: Gradient evaluation took 0 seconds
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    Chain 2: Adjust your expectations accordingly!
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    Chain 1:
    Chain 1: Elapsed Time: 0.046 seconds (Warm-up)
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    Chain 1: 0.312 seconds (Total)
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    Chain 2:
    Chain 2: Elapsed Time: 0.047 seconds (Warm-up)
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    Chain 2: 0.25 seconds (Total)
    Chain 2:
    Scale for 'fill' is already present. Adding another scale for 'fill', which will replace the existing scale.
    --- finished re-building 'stroop.Rmd'
    
    SUMMARY: processing the following file failed:
     'adaptation_level.Rmd'
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-release-windows-ix86+x86_64