CRAN Package Check Results for Package foieGras

Last updated on 2019-09-14 22:48:25 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.2.2 104.39 94.93 199.32 ERROR
r-devel-linux-x86_64-debian-gcc 0.2.2 88.05 75.30 163.35 ERROR
r-devel-linux-x86_64-fedora-clang 0.2.2 335.74 NOTE
r-devel-linux-x86_64-fedora-gcc 0.2.2 319.31 OK
r-devel-windows-ix86+x86_64 0.2.2 213.00 291.00 504.00 NOTE
r-patched-linux-x86_64 0.2.2 88.86 93.63 182.49 ERROR
r-patched-solaris-x86 0.2.2 351.70 OK
r-release-linux-x86_64 0.2.2 87.60 93.18 180.78 ERROR
r-release-windows-ix86+x86_64 0.2.2 163.00 223.00 386.00 NOTE
r-release-osx-x86_64 0.2.2 NOTE
r-oldrel-windows-ix86+x86_64 0.2.2 181.00 229.00 410.00 NOTE
r-oldrel-osx-x86_64 0.2.2 NOTE

Additional issues

clang-UBSAN

Check Details

Version: 0.2.2
Check: examples
Result: ERROR
    Running examples in 'foieGras-Ex.R' failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: fit_ssm
    > ### Title: Fit a continuous-time state-space model to filter Argos
    > ### satellite geolocation data
    > ### Aliases: fit_ssm
    >
    > ### ** Examples
    >
    > ## fit crw model to multiple individuals with Argos LS data
    > data(ellie)
    > fit <- fit_ssm(ellie, model = "rw", time.step = 24)
    
    prefiltering data...
    proj_create: init=epsg:/init=IGNF: syntax not supported in non-PROJ4 emulation mode
    Warning in CPL_crs_from_proj4string(x) :
     GDAL cannot import PROJ.4 string `+init=epsg:3395 +units=km': returning missing CRS
    Error in if (!is.null(u) && crs$units != u) stop(paste0("units ", u, " not recognized: older GDAL version?"), :
     missing value where TRUE/FALSE needed
    Calls: fit_ssm ... st_transform.sf -> st_transform -> st_transform.sfc -> make_crs
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.2.2
Check: tests
Result: ERROR
     Running 'testthat.R' [5s/5s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > library(testthat)
     > library(foieGras)
     >
     > test_check("foieGras")
    
     prefiltering data...
     proj_create: init=epsg:/init=IGNF: syntax not supported in non-PROJ4 emulation mode
     -- 1. Error: (unknown) (@test-fit_ssm.R#13) -----------------------------------
     missing value where TRUE/FALSE needed
     1: fit_ssm(dkf, model = "crw", time.step = 24) at testthat/test-fit_ssm.R:13
     2: d %>% group_by(id) %>% do(pf = prefilter(., vmax = vmax, ang = ang, distlim = distlim,
     spdf = spdf, min.dt = min.dt))
     3: withVisible(eval(quote(`_fseq`(`_lhs`)), env, env))
     4: eval(quote(`_fseq`(`_lhs`)), env, env)
     5: eval(quote(`_fseq`(`_lhs`)), env, env)
     6: `_fseq`(`_lhs`)
     7: freduce(value, `_function_list`)
     8: withVisible(function_list[[k]](value))
     9: function_list[[k]](value)
     10: do(., pf = prefilter(., vmax = vmax, ang = ang, distlim = distlim, spdf = spdf, min.dt = min.dt))
     ...
     17: eval(quote(`_fseq`(`_lhs`)), env, env)
     18: `_fseq`(`_lhs`)
     19: freduce(value, `_function_list`)
     20: withVisible(function_list[[k]](value))
     21: function_list[[k]](value)
     22: st_transform(., crs = prj)
     23: st_transform.sf(., crs = prj)
     24: st_transform(st_geometry(x), crs, ...)
     25: st_transform.sfc(st_geometry(x), crs, ...)
     26: make_crs(crs)
    
    
     prefiltering data...
     proj_create: init=epsg:/init=IGNF: syntax not supported in non-PROJ4 emulation mode
     -- 2. Error: (unknown) (@test-grab.R#6) ---------------------------------------
     missing value where TRUE/FALSE needed
     1: fit_ssm(dkf, model = "crw", time.step = 24) at testthat/test-grab.R:6
     2: d %>% group_by(id) %>% do(pf = prefilter(., vmax = vmax, ang = ang, distlim = distlim,
     spdf = spdf, min.dt = min.dt))
     3: withVisible(eval(quote(`_fseq`(`_lhs`)), env, env))
     4: eval(quote(`_fseq`(`_lhs`)), env, env)
     5: eval(quote(`_fseq`(`_lhs`)), env, env)
     6: `_fseq`(`_lhs`)
     7: freduce(value, `_function_list`)
     8: withVisible(function_list[[k]](value))
     9: function_list[[k]](value)
     10: do(., pf = prefilter(., vmax = vmax, ang = ang, distlim = distlim, spdf = spdf, min.dt = min.dt))
     ...
     17: eval(quote(`_fseq`(`_lhs`)), env, env)
     18: `_fseq`(`_lhs`)
     19: freduce(value, `_function_list`)
     20: withVisible(function_list[[k]](value))
     21: function_list[[k]](value)
     22: st_transform(., crs = prj)
     23: st_transform.sf(., crs = prj)
     24: st_transform(st_geometry(x), crs, ...)
     25: st_transform.sfc(st_geometry(x), crs, ...)
     26: make_crs(crs)
    
    
     prefiltering data...
     proj_create: init=epsg:/init=IGNF: syntax not supported in non-PROJ4 emulation mode
     -- 3. Error: (unknown) (@test-plot.R#6) ---------------------------------------
     missing value where TRUE/FALSE needed
     1: fit_ssm(dkf, model = "crw", time.step = 24) at testthat/test-plot.R:6
     2: d %>% group_by(id) %>% do(pf = prefilter(., vmax = vmax, ang = ang, distlim = distlim,
     spdf = spdf, min.dt = min.dt))
     3: withVisible(eval(quote(`_fseq`(`_lhs`)), env, env))
     4: eval(quote(`_fseq`(`_lhs`)), env, env)
     5: eval(quote(`_fseq`(`_lhs`)), env, env)
     6: `_fseq`(`_lhs`)
     7: freduce(value, `_function_list`)
     8: withVisible(function_list[[k]](value))
     9: function_list[[k]](value)
     10: do(., pf = prefilter(., vmax = vmax, ang = ang, distlim = distlim, spdf = spdf, min.dt = min.dt))
     ...
     17: eval(quote(`_fseq`(`_lhs`)), env, env)
     18: `_fseq`(`_lhs`)
     19: freduce(value, `_function_list`)
     20: withVisible(function_list[[k]](value))
     21: function_list[[k]](value)
     22: st_transform(., crs = prj)
     23: st_transform.sf(., crs = prj)
     24: st_transform(st_geometry(x), crs, ...)
     25: st_transform.sfc(st_geometry(x), crs, ...)
     26: make_crs(crs)
    
     proj_create: init=epsg:/init=IGNF: syntax not supported in non-PROJ4 emulation mode
     OGR: Corrupt data
     -- 4. Error: (unknown) (@test-prefilter.R#24) ---------------------------------
     OGR error
     1: sf::st_transform(ellie_sf, crs = "+init=epsg:3031 + units=m") at testthat/test-prefilter.R:24
     2: st_transform.sf(ellie_sf, crs = "+init=epsg:3031 + units=m")
     3: st_transform(st_geometry(x), crs, ...)
     4: st_transform.sfc(st_geometry(x), crs, ...)
     5: structure(CPL_transform(x, crs$proj4string), single_type = NULL, crs = crs)
     6: CPL_transform(x, crs$proj4string)
    
     == testthat results ===========================================================
     [ OK: 4 | SKIPPED: 0 | WARNINGS: 4 | FAILED: 4 ]
     1. Error: (unknown) (@test-fit_ssm.R#13)
     2. Error: (unknown) (@test-grab.R#6)
     3. Error: (unknown) (@test-plot.R#6)
     4. Error: (unknown) (@test-prefilter.R#24)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-linux-x86_64-debian-clang

Version: 0.2.2
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building 'foiegras-basics.Rmd' using rmarkdown
    proj_create: init=epsg:/init=IGNF: syntax not supported in non-PROJ4 emulation mode
    Quitting from lines 60-64 (foiegras-basics.Rmd)
    Error: processing vignette 'foiegras-basics.Rmd' failed with diagnostics:
    missing value where TRUE/FALSE needed
    --- failed re-building 'foiegras-basics.Rmd'
    
    SUMMARY: processing the following file failed:
     'foiegras-basics.Rmd'
    
    Error: Vignette re-building failed.
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.2.2
Check: tests
Result: ERROR
     Running ‘testthat.R’ [3s/5s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(foieGras)
     >
     > test_check("foieGras")
    
     prefiltering data...
     proj_create: init=epsg:/init=IGNF: syntax not supported in non-PROJ4 emulation mode
     ── 1. Error: (unknown) (@test-fit_ssm.R#13) ───────────────────────────────────
     missing value where TRUE/FALSE needed
     1: fit_ssm(dkf, model = "crw", time.step = 24) at testthat/test-fit_ssm.R:13
     2: d %>% group_by(id) %>% do(pf = prefilter(., vmax = vmax, ang = ang, distlim = distlim,
     spdf = spdf, min.dt = min.dt))
     3: withVisible(eval(quote(`_fseq`(`_lhs`)), env, env))
     4: eval(quote(`_fseq`(`_lhs`)), env, env)
     5: eval(quote(`_fseq`(`_lhs`)), env, env)
     6: `_fseq`(`_lhs`)
     7: freduce(value, `_function_list`)
     8: withVisible(function_list[[k]](value))
     9: function_list[[k]](value)
     10: do(., pf = prefilter(., vmax = vmax, ang = ang, distlim = distlim, spdf = spdf, min.dt = min.dt))
     ...
     17: eval(quote(`_fseq`(`_lhs`)), env, env)
     18: `_fseq`(`_lhs`)
     19: freduce(value, `_function_list`)
     20: withVisible(function_list[[k]](value))
     21: function_list[[k]](value)
     22: st_transform(., crs = prj)
     23: st_transform.sf(., crs = prj)
     24: st_transform(st_geometry(x), crs, ...)
     25: st_transform.sfc(st_geometry(x), crs, ...)
     26: make_crs(crs)
    
    
     prefiltering data...
     proj_create: init=epsg:/init=IGNF: syntax not supported in non-PROJ4 emulation mode
     ── 2. Error: (unknown) (@test-grab.R#6) ───────────────────────────────────────
     missing value where TRUE/FALSE needed
     1: fit_ssm(dkf, model = "crw", time.step = 24) at testthat/test-grab.R:6
     2: d %>% group_by(id) %>% do(pf = prefilter(., vmax = vmax, ang = ang, distlim = distlim,
     spdf = spdf, min.dt = min.dt))
     3: withVisible(eval(quote(`_fseq`(`_lhs`)), env, env))
     4: eval(quote(`_fseq`(`_lhs`)), env, env)
     5: eval(quote(`_fseq`(`_lhs`)), env, env)
     6: `_fseq`(`_lhs`)
     7: freduce(value, `_function_list`)
     8: withVisible(function_list[[k]](value))
     9: function_list[[k]](value)
     10: do(., pf = prefilter(., vmax = vmax, ang = ang, distlim = distlim, spdf = spdf, min.dt = min.dt))
     ...
     17: eval(quote(`_fseq`(`_lhs`)), env, env)
     18: `_fseq`(`_lhs`)
     19: freduce(value, `_function_list`)
     20: withVisible(function_list[[k]](value))
     21: function_list[[k]](value)
     22: st_transform(., crs = prj)
     23: st_transform.sf(., crs = prj)
     24: st_transform(st_geometry(x), crs, ...)
     25: st_transform.sfc(st_geometry(x), crs, ...)
     26: make_crs(crs)
    
    
     prefiltering data...
     proj_create: init=epsg:/init=IGNF: syntax not supported in non-PROJ4 emulation mode
     ── 3. Error: (unknown) (@test-plot.R#6) ───────────────────────────────────────
     missing value where TRUE/FALSE needed
     1: fit_ssm(dkf, model = "crw", time.step = 24) at testthat/test-plot.R:6
     2: d %>% group_by(id) %>% do(pf = prefilter(., vmax = vmax, ang = ang, distlim = distlim,
     spdf = spdf, min.dt = min.dt))
     3: withVisible(eval(quote(`_fseq`(`_lhs`)), env, env))
     4: eval(quote(`_fseq`(`_lhs`)), env, env)
     5: eval(quote(`_fseq`(`_lhs`)), env, env)
     6: `_fseq`(`_lhs`)
     7: freduce(value, `_function_list`)
     8: withVisible(function_list[[k]](value))
     9: function_list[[k]](value)
     10: do(., pf = prefilter(., vmax = vmax, ang = ang, distlim = distlim, spdf = spdf, min.dt = min.dt))
     ...
     17: eval(quote(`_fseq`(`_lhs`)), env, env)
     18: `_fseq`(`_lhs`)
     19: freduce(value, `_function_list`)
     20: withVisible(function_list[[k]](value))
     21: function_list[[k]](value)
     22: st_transform(., crs = prj)
     23: st_transform.sf(., crs = prj)
     24: st_transform(st_geometry(x), crs, ...)
     25: st_transform.sfc(st_geometry(x), crs, ...)
     26: make_crs(crs)
    
     proj_create: init=epsg:/init=IGNF: syntax not supported in non-PROJ4 emulation mode
     OGR: Corrupt data
     ── 4. Error: (unknown) (@test-prefilter.R#24) ─────────────────────────────────
     OGR error
     1: sf::st_transform(ellie_sf, crs = "+init=epsg:3031 + units=m") at testthat/test-prefilter.R:24
     2: st_transform.sf(ellie_sf, crs = "+init=epsg:3031 + units=m")
     3: st_transform(st_geometry(x), crs, ...)
     4: st_transform.sfc(st_geometry(x), crs, ...)
     5: structure(CPL_transform(x, crs$proj4string), single_type = NULL, crs = crs)
     6: CPL_transform(x, crs$proj4string)
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     [ OK: 4 | SKIPPED: 0 | WARNINGS: 4 | FAILED: 4 ]
     1. Error: (unknown) (@test-fit_ssm.R#13)
     2. Error: (unknown) (@test-grab.R#6)
     3. Error: (unknown) (@test-plot.R#6)
     4. Error: (unknown) (@test-prefilter.R#24)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.2.2
Check: installed package size
Result: NOTE
     installed size is 27.5Mb
     sub-directories of 1Mb or more:
     libs 26.6Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 0.2.2
Check: tests
Result: ERROR
     Running ‘testthat.R’ [4s/5s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(foieGras)
     >
     > test_check("foieGras")
    
     prefiltering data...
     proj_create: init=epsg:/init=IGNF: syntax not supported in non-PROJ4 emulation mode
     ── 1. Error: (unknown) (@test-fit_ssm.R#13) ───────────────────────────────────
     missing value where TRUE/FALSE needed
     1: fit_ssm(dkf, model = "crw", time.step = 24) at testthat/test-fit_ssm.R:13
     2: d %>% group_by(id) %>% do(pf = prefilter(., vmax = vmax, ang = ang, distlim = distlim,
     spdf = spdf, min.dt = min.dt))
     3: withVisible(eval(quote(`_fseq`(`_lhs`)), env, env))
     4: eval(quote(`_fseq`(`_lhs`)), env, env)
     5: eval(quote(`_fseq`(`_lhs`)), env, env)
     6: `_fseq`(`_lhs`)
     7: freduce(value, `_function_list`)
     8: withVisible(function_list[[k]](value))
     9: function_list[[k]](value)
     10: do(., pf = prefilter(., vmax = vmax, ang = ang, distlim = distlim, spdf = spdf, min.dt = min.dt))
     ...
     17: eval(quote(`_fseq`(`_lhs`)), env, env)
     18: `_fseq`(`_lhs`)
     19: freduce(value, `_function_list`)
     20: withVisible(function_list[[k]](value))
     21: function_list[[k]](value)
     22: st_transform(., crs = prj)
     23: st_transform.sf(., crs = prj)
     24: st_transform(st_geometry(x), crs, ...)
     25: st_transform.sfc(st_geometry(x), crs, ...)
     26: make_crs(crs)
    
    
     prefiltering data...
     proj_create: init=epsg:/init=IGNF: syntax not supported in non-PROJ4 emulation mode
     ── 2. Error: (unknown) (@test-grab.R#6) ───────────────────────────────────────
     missing value where TRUE/FALSE needed
     1: fit_ssm(dkf, model = "crw", time.step = 24) at testthat/test-grab.R:6
     2: d %>% group_by(id) %>% do(pf = prefilter(., vmax = vmax, ang = ang, distlim = distlim,
     spdf = spdf, min.dt = min.dt))
     3: withVisible(eval(quote(`_fseq`(`_lhs`)), env, env))
     4: eval(quote(`_fseq`(`_lhs`)), env, env)
     5: eval(quote(`_fseq`(`_lhs`)), env, env)
     6: `_fseq`(`_lhs`)
     7: freduce(value, `_function_list`)
     8: withVisible(function_list[[k]](value))
     9: function_list[[k]](value)
     10: do(., pf = prefilter(., vmax = vmax, ang = ang, distlim = distlim, spdf = spdf, min.dt = min.dt))
     ...
     17: eval(quote(`_fseq`(`_lhs`)), env, env)
     18: `_fseq`(`_lhs`)
     19: freduce(value, `_function_list`)
     20: withVisible(function_list[[k]](value))
     21: function_list[[k]](value)
     22: st_transform(., crs = prj)
     23: st_transform.sf(., crs = prj)
     24: st_transform(st_geometry(x), crs, ...)
     25: st_transform.sfc(st_geometry(x), crs, ...)
     26: make_crs(crs)
    
    
     prefiltering data...
     proj_create: init=epsg:/init=IGNF: syntax not supported in non-PROJ4 emulation mode
     ── 3. Error: (unknown) (@test-plot.R#6) ───────────────────────────────────────
     missing value where TRUE/FALSE needed
     1: fit_ssm(dkf, model = "crw", time.step = 24) at testthat/test-plot.R:6
     2: d %>% group_by(id) %>% do(pf = prefilter(., vmax = vmax, ang = ang, distlim = distlim,
     spdf = spdf, min.dt = min.dt))
     3: withVisible(eval(quote(`_fseq`(`_lhs`)), env, env))
     4: eval(quote(`_fseq`(`_lhs`)), env, env)
     5: eval(quote(`_fseq`(`_lhs`)), env, env)
     6: `_fseq`(`_lhs`)
     7: freduce(value, `_function_list`)
     8: withVisible(function_list[[k]](value))
     9: function_list[[k]](value)
     10: do(., pf = prefilter(., vmax = vmax, ang = ang, distlim = distlim, spdf = spdf, min.dt = min.dt))
     ...
     17: eval(quote(`_fseq`(`_lhs`)), env, env)
     18: `_fseq`(`_lhs`)
     19: freduce(value, `_function_list`)
     20: withVisible(function_list[[k]](value))
     21: function_list[[k]](value)
     22: st_transform(., crs = prj)
     23: st_transform.sf(., crs = prj)
     24: st_transform(st_geometry(x), crs, ...)
     25: st_transform.sfc(st_geometry(x), crs, ...)
     26: make_crs(crs)
    
     proj_create: init=epsg:/init=IGNF: syntax not supported in non-PROJ4 emulation mode
     OGR: Corrupt data
     ── 4. Error: (unknown) (@test-prefilter.R#24) ─────────────────────────────────
     OGR error
     1: sf::st_transform(ellie_sf, crs = "+init=epsg:3031 + units=m") at testthat/test-prefilter.R:24
     2: st_transform.sf(ellie_sf, crs = "+init=epsg:3031 + units=m")
     3: st_transform(st_geometry(x), crs, ...)
     4: st_transform.sfc(st_geometry(x), crs, ...)
     5: structure(CPL_transform(x, crs$proj4string), single_type = NULL, crs = crs)
     6: CPL_transform(x, crs$proj4string)
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     [ OK: 4 | SKIPPED: 0 | WARNINGS: 4 | FAILED: 4 ]
     1. Error: (unknown) (@test-fit_ssm.R#13)
     2. Error: (unknown) (@test-grab.R#6)
     3. Error: (unknown) (@test-plot.R#6)
     4. Error: (unknown) (@test-prefilter.R#24)
    
     Error: testthat unit tests failed
     Execution halted
Flavors: r-patched-linux-x86_64, r-release-linux-x86_64