CRAN Package Check Results for Package iMRMC

Last updated on 2018-09-19 22:49:47 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.1.0 1.89 85.95 87.84 OK
r-devel-linux-x86_64-debian-gcc 1.1.0 1.98 63.33 65.31 OK
r-devel-linux-x86_64-fedora-clang 1.1.0 101.28 OK
r-devel-linux-x86_64-fedora-gcc 1.1.0 98.96 OK
r-devel-windows-ix86+x86_64 1.1.0 4.00 67.00 71.00 OK
r-patched-linux-x86_64 1.1.0 1.97 78.13 80.10 OK
r-patched-solaris-x86 1.1.0 104.30 ERROR
r-release-linux-x86_64 1.1.0 2.46 78.43 80.89 OK
r-release-windows-ix86+x86_64 1.1.0 5.00 53.00 58.00 OK
r-release-osx-x86_64 1.1.0 ERROR
r-oldrel-windows-ix86+x86_64 1.1.0 3.00 54.00 57.00 OK
r-oldrel-osx-x86_64 1.1.0 ERROR

Check Details

Version: 1.1.0
Check: tests
Result: ERROR
     Running ‘testthat.R’ [23s/15s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     >
     > testthat::test_check("iMRMC")
     Loading required package: iMRMC
     ── 1. Failure: createIMRMCdf and undoIMRMCdf work as expected (@test_createANDun
     `saveResult` not equal to `result`.
     Component "varDecomp": Component "BDG": Component "Ustat": Component "comp": Component "testA.NO_MOD": Component "M5": Mean relative difference: 1.812622e-06
     Component "varDecomp": Component "BDG": Component "Ustat": Component "comp": Component "testB.NO_MOD": Component "M5": Mean relative difference: 1.558693e-06
     Component "varDecomp": Component "BDG": Component "Ustat": Component "comp": Component "testA.testB": Component "M5": Mean relative difference: 1.676095e-06
    
    
     NR N0 N1 modalityA modalityB UstatOrMLE AUCA varAUCA AUCB
     1 5 40 40 testA NO_MOD Ustat 0.704375 0.006313930 NA
     2 5 40 40 testB NO_MOD Ustat 0.758500 0.002372053 NA
     3 5 40 40 testA testB Ustat 0.704375 0.006313930 0.7585
     varAUCB
     1 NA
     2 NA
     3 0.002372053
    
     NR N0 N1 modalityA modalityB UstatOrMLE AUCAminusAUCB varAUCAminusAUCB
     1 5 40 40 testA NO_MOD Ustat NA NA
     2 5 40 40 testB NO_MOD Ustat NA NA
     3 5 40 40 testA testB Ustat -0.054125 0.004989509
    
     NR N0 N1 modalityA modalityB UstatOrMLE dfBDG pValueBDG botCIBDG
     1 5 40 40 testA NO_MOD Ustat 6.805222 4.221892e-02 0.5099428
     2 5 40 40 testB NO_MOD Ustat 27.408388 1.334002e-05 0.6585682
     3 5 40 40 testA testB Ustat 7.350070 4.685760e-01 -0.2211537
     topCIBDG rejectBDG
     1 0.8988072 1
     2 0.8584318 1
     3 0.1129037 0
    
     Elapsed time: 0.266 0.005 4.775
     ── 2. Failure: doIMRMC does not change (@test_doIMRMC.R#56) ───────────────────
     `saveResult` not equal to `result`.
     Component "varDecomp": Component "BDG": Component "Ustat": Component "comp": Component "testA.NO_MOD": Component "M5": Mean relative difference: 1.812622e-06
     Component "varDecomp": Component "BDG": Component "Ustat": Component "comp": Component "testB.NO_MOD": Component "M5": Mean relative difference: 1.558693e-06
     Component "varDecomp": Component "BDG": Component "Ustat": Component "comp": Component "testA.testB": Component "M5": Mean relative difference: 1.676095e-06
    
     ── 3. Failure: doIMRMC given fileName does not change (@test_doIMRMCfromFile.R#2
     `saveResult` not equal to `result`.
     Component "varDecomp": Component "BDG": Component "Ustat": Component "comp": Component "testA.NO_MOD": Component "M5": Mean relative difference: 1.812622e-06
     Component "varDecomp": Component "BDG": Component "Ustat": Component "comp": Component "testB.NO_MOD": Component "M5": Mean relative difference: 1.558693e-06
     Component "varDecomp": Component "BDG": Component "Ustat": Component "comp": Component "testA.testB": Component "M5": Mean relative difference: 1.676095e-06
    
     [1] ""
     modality A mean shift, neg = 0.07790319
     modality A mean shift, pos = 0.9135697
     modality B mean shift, neg = -0.1750383
     modality B mean shift, pos = 0.8659156
    
     uStat11.jointD.identity
     $mean
     A B AminusB
     0.91356967 0.86591565 0.04765402
    
     $var
     A B AminusB
     0.04841548 0.02890617 0.03198493
    
    
     uStat11.conditionalD.identity
     $mean
     A B AminusB
     0.91356967 0.86591565 0.04765402
    
     $var
     A B AminusB
     0.04841548 0.02890617 0.03198493
    
    
     uStat11.jointD.diff
     $mean
     AminusB CminusD AminusB.minus.CminusD
     0.04765402 -0.04765402 0.09530804
    
     $var
     AminusB CminusD AminusB.minus.CminusD
     0.03198493 0.03198493 0.12793972
    
    
     uStat11.conditionalD.diff
     $mean
     AminusB CminusD AminusB.minus.CminusD
     0.04765402 -0.04765402 0.09530804
    
     $var
     AminusB CminusD AminusB.minus.CminusD
     0.03198493 0.03198493 0.12793972
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     OK: 8 SKIPPED: 0 FAILED: 3
     1. Failure: createIMRMCdf and undoIMRMCdf work as expected (@test_createANDundoIMRMCdf.R#40)
     2. Failure: doIMRMC does not change (@test_doIMRMC.R#56)
     3. Failure: doIMRMC given fileName does not change (@test_doIMRMCfromFile.R#24)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-patched-solaris-x86

Version: 1.1.0
Check: examples
Result: ERROR
    Running examples in ‘iMRMC-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: doIMRMC
    > ### Title: MRMC analysis of the area under the ROC curve
    > ### Aliases: doIMRMC
    >
    > ### ** Examples
    >
    > # Create a sample configuration file
    > config <- sim.gRoeMetz.config()
    > # Simulate an MRMC ROC data set
    > dFrame.imrmc <- sim.gRoeMetz(config)
    > # Analyze the MRMC ROC data
    > result <- doIMRMC(dFrame.imrmc)
    Warning in file(file, "rt") :
     cannot open file '/var/folders/xn/m8dzdsgs7sg8q7jgflnqm8w80000gn/T//RtmpXpzF0q/imrmcDir/AUCperReader.csv': No such file or directory
    Error in file(file, "rt") : cannot open the connection
    Calls: doIMRMC -> <Anonymous> -> read.table -> file
    Execution halted
Flavor: r-release-osx-x86_64

Version: 1.1.0
Check: tests
Result: ERROR
     Running ‘testthat.R’ [5s/5s]
    Running the tests in ‘tests/testthat.R’ failed.
    Last 13 lines of output:
     AminusB CminusD AminusB.minus.CminusD
     0.04765402 -0.04765402 0.09530804
    
     $var
     AminusB CminusD AminusB.minus.CminusD
     0.03198493 0.03198493 0.12793972
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     OK: 11 SKIPPED: 0 FAILED: 3
     1. Error: (unknown) (@test_createANDundoIMRMCdf.R#26)
     2. Error: (unknown) (@test_doIMRMC.R#26)
     3. Error: (unknown) (@test_doIMRMCfromFile.R#13)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-release-osx-x86_64

Version: 1.1.0
Check: examples
Result: ERROR
    Running examples in ‘iMRMC-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: doIMRMC
    > ### Title: MRMC analysis of the area under the ROC curve
    > ### Aliases: doIMRMC
    >
    > ### ** Examples
    >
    > # Create a sample configuration file
    > config <- sim.gRoeMetz.config()
    > # Simulate an MRMC ROC data set
    > dFrame.imrmc <- sim.gRoeMetz(config)
    > # Analyze the MRMC ROC data
    > result <- doIMRMC(dFrame.imrmc)
    Warning in file(file, "rt") :
     cannot open file '/tmp/Rtmp1gYJPi/imrmcDir/AUCperReader.csv': No such file or directory
    Error in file(file, "rt") : cannot open the connection
    Calls: doIMRMC -> <Anonymous> -> read.table -> file
    Execution halted
Flavor: r-oldrel-osx-x86_64

Version: 1.1.0
Check: tests
Result: ERROR
     Running ‘testthat.R’ [5s/4s]
    Running the tests in ‘tests/testthat.R’ failed.
    Last 13 lines of output:
     AminusB CminusD AminusB.minus.CminusD
     0.04765402 -0.04765402 0.09530804
    
     $var
     AminusB CminusD AminusB.minus.CminusD
     0.03198493 0.03198493 0.12793972
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     OK: 11 SKIPPED: 0 FAILED: 3
     1. Error: (unknown) (@test_createANDundoIMRMCdf.R#26)
     2. Error: (unknown) (@test_doIMRMC.R#26)
     3. Error: (unknown) (@test_doIMRMCfromFile.R#13)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-oldrel-osx-x86_64