CRAN Package Check Results for Package occCite

Last updated on 2021-10-17 22:48:42 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.5.0 9.40 225.66 235.06 OK
r-devel-linux-x86_64-debian-gcc 0.5.0 7.83 168.02 175.85 OK
r-devel-linux-x86_64-fedora-clang 0.5.0 290.34 ERROR
r-devel-linux-x86_64-fedora-gcc 0.5.0 298.93 NOTE
r-devel-windows-x86_64 0.5.0 19.00 449.00 468.00 OK
r-devel-windows-x86_64-gcc10-UCRT 0.4.9 NOTE
r-patched-linux-x86_64 0.5.0 15.43 223.65 239.08 OK
r-patched-solaris-x86 0.5.0 243.00 ERROR
r-release-linux-x86_64 0.5.0 10.30 227.69 237.99 OK
r-release-macos-arm64 0.4.9 NOTE
r-release-macos-x86_64 0.5.0 ERROR
r-release-windows-ix86+x86_64 0.5.0 18.00 386.00 404.00 OK
r-oldrel-macos-x86_64 0.5.0 ERROR
r-oldrel-windows-ix86+x86_64 0.5.0 20.00 359.00 379.00 OK

Additional issues

MKL

Check Details

Version: 0.5.0
Check: data for non-ASCII characters
Result: NOTE
     Note: found 6 marked UTF-8 strings
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-x86, r-release-macos-x86_64, r-oldrel-macos-x86_64

Version: 0.5.0
Check: examples
Result: ERROR
    Running examples in ‘occCite-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: plot.occCiteData
    > ### Title: Plotting summary figures for occCite search results
    > ### Aliases: plot.occCiteData
    >
    > ### ** Examples
    >
    > data(myOccCiteObject)
    > plot(
    + x = myOccCiteObject, bySpecies = FALSE,
    + plotTypes = c("yearHistogram", "source", "aggregator")
    + )
    $yearHistogram
    $data
    $data[[1]]
     y count x xmin xmax density ncount ndensity
    1 8 8 1824.0 1814.4 1833.6 0.000322248 0.008359457 0.008359457
    2 0 0 1843.2 1833.6 1852.8 0.000000000 0.000000000 0.000000000
    3 2 2 1862.4 1852.8 1872.0 0.000080562 0.002089864 0.002089864
    4 5 5 1881.6 1872.0 1891.2 0.000201405 0.005224660 0.005224660
    5 13 13 1900.8 1891.2 1910.4 0.000523653 0.013584117 0.013584117
    6 35 35 1920.0 1910.4 1929.6 0.001409835 0.036572623 0.036572623
    7 44 44 1939.2 1929.6 1948.8 0.001772364 0.045977011 0.045977011
    8 82 82 1958.4 1948.8 1968.0 0.003303042 0.085684431 0.085684431
    9 120 120 1977.6 1968.0 1987.2 0.004833720 0.125391850 0.125391850
    10 27 27 1996.8 1987.2 2006.4 0.001087587 0.028213166 0.028213166
    11 957 957 2016.0 2006.4 2025.6 0.038548917 1.000000000 1.000000000
     flipped_aes PANEL group ymin ymax colour fill size linetype alpha
    1 FALSE 1 -1 0 8 white black 0.5 1 0.9
    2 FALSE 1 -1 0 0 white black 0.5 1 0.9
    3 FALSE 1 -1 0 2 white black 0.5 1 0.9
    4 FALSE 1 -1 0 5 white black 0.5 1 0.9
    5 FALSE 1 -1 0 13 white black 0.5 1 0.9
    6 FALSE 1 -1 0 35 white black 0.5 1 0.9
    7 FALSE 1 -1 0 44 white black 0.5 1 0.9
    8 FALSE 1 -1 0 82 white black 0.5 1 0.9
    9 FALSE 1 -1 0 120 white black 0.5 1 0.9
    10 FALSE 1 -1 0 27 white black 0.5 1 0.9
    11 FALSE 1 -1 0 957 white black 0.5 1 0.9
    
    
    $layout
    <ggproto object: Class Layout, gg>
     coord: <ggproto object: Class CoordCartesian, Coord, gg>
     aspect: function
     backtransform_range: function
     clip: on
     default: TRUE
     distance: function
     expand: TRUE
     is_free: function
     is_linear: function
     labels: function
     limits: list
     modify_scales: function
     range: function
     render_axis_h: function
     render_axis_v: function
     render_bg: function
     render_fg: function
     setup_data: function
     setup_layout: function
     setup_panel_guides: function
     setup_panel_params: function
     setup_params: function
     train_panel_guides: function
     transform: function
     super: <ggproto object: Class CoordCartesian, Coord, gg>
     coord_params: list
     facet: <ggproto object: Class FacetNull, Facet, gg>
     compute_layout: function
     draw_back: function
     draw_front: function
     draw_labels: function
     draw_panels: function
     finish_data: function
     init_scales: function
     map_data: function
     params: list
     setup_data: function
     setup_params: function
     shrink: TRUE
     train_scales: function
     vars: function
     super: <ggproto object: Class FacetNull, Facet, gg>
     facet_params: list
     finish_data: function
     get_scales: function
     layout: data.frame
     map_position: function
     panel_params: list
     panel_scales_x: list
     panel_scales_y: list
     render: function
     render_labels: function
     reset_scales: function
     setup: function
     setup_panel_guides: function
     setup_panel_params: function
     train_position: function
     xlabel: function
     ylabel: function
     super: <ggproto object: Class Layout, gg>
    
    $plot
    
    attr(,"class")
    [1] "ggplot_built"
    
    $source
    $data
    $data[[1]]
     fill x y PANEL group xmin xmax ymin ymax colour size linetype alpha
    1 #440154FF 1 1 1 1 0.5 1.5 0.5 1.5 white 2 1 NA
    2 #440154FF 1 2 1 1 0.5 1.5 1.5 2.5 white 2 1 NA
    3 #440154FF 1 3 1 1 0.5 1.5 2.5 3.5 white 2 1 NA
    4 #440154FF 1 4 1 1 0.5 1.5 3.5 4.5 white 2 1 NA
    5 #440154FF 1 5 1 1 0.5 1.5 4.5 5.5 white 2 1 NA
    6 #440154FF 1 6 1 1 0.5 1.5 5.5 6.5 white 2 1 NA
    7 #440154FF 1 7 1 1 0.5 1.5 6.5 7.5 white 2 1 NA
    8 #440154FF 1 8 1 1 0.5 1.5 7.5 8.5 white 2 1 NA
    9 #440154FF 1 9 1 1 0.5 1.5 8.5 9.5 white 2 1 NA
    10 #440154FF 1 10 1 1 0.5 1.5 9.5 10.5 white 2 1 NA
    11 #440154FF 2 1 1 1 1.5 2.5 0.5 1.5 white 2 1 NA
    12 #440154FF 2 2 1 1 1.5 2.5 1.5 2.5 white 2 1 NA
    13 #440154FF 2 3 1 1 1.5 2.5 2.5 3.5 white 2 1 NA
    14 #440154FF 2 4 1 1 1.5 2.5 3.5 4.5 white 2 1 NA
    15 #440154FF 2 5 1 1 1.5 2.5 4.5 5.5 white 2 1 NA
    16 #440154FF 2 6 1 1 1.5 2.5 5.5 6.5 white 2 1 NA
    17 #440154FF 2 7 1 1 1.5 2.5 6.5 7.5 white 2 1 NA
    18 #440154FF 2 8 1 1 1.5 2.5 7.5 8.5 white 2 1 NA
    19 #440154FF 2 9 1 1 1.5 2.5 8.5 9.5 white 2 1 NA
    20 #440154FF 2 10 1 1 1.5 2.5 9.5 10.5 white 2 1 NA
    21 #440154FF 3 1 1 1 2.5 3.5 0.5 1.5 white 2 1 NA
    22 #440154FF 3 2 1 1 2.5 3.5 1.5 2.5 white 2 1 NA
    23 #440154FF 3 3 1 1 2.5 3.5 2.5 3.5 white 2 1 NA
    24 #440154FF 3 4 1 1 2.5 3.5 3.5 4.5 white 2 1 NA
    25 #440154FF 3 5 1 1 2.5 3.5 4.5 5.5 white 2 1 NA
    26 #440154FF 3 6 1 1 2.5 3.5 5.5 6.5 white 2 1 NA
    27 #440154FF 3 7 1 1 2.5 3.5 6.5 7.5 white 2 1 NA
    28 #440154FF 3 8 1 1 2.5 3.5 7.5 8.5 white 2 1 NA
    29 #440154FF 3 9 1 1 2.5 3.5 8.5 9.5 white 2 1 NA
    30 #440154FF 3 10 1 1 2.5 3.5 9.5 10.5 white 2 1 NA
    31 #440154FF 4 1 1 1 3.5 4.5 0.5 1.5 white 2 1 NA
    32 #440154FF 4 2 1 1 3.5 4.5 1.5 2.5 white 2 1 NA
    33 #440154FF 4 3 1 1 3.5 4.5 2.5 3.5 white 2 1 NA
    34 #440154FF 4 4 1 1 3.5 4.5 3.5 4.5 white 2 1 NA
    35 #440154FF 4 5 1 1 3.5 4.5 4.5 5.5 white 2 1 NA
    36 #440154FF 4 6 1 1 3.5 4.5 5.5 6.5 white 2 1 NA
    37 #440154FF 4 7 1 1 3.5 4.5 6.5 7.5 white 2 1 NA
    38 #440154FF 4 8 1 1 3.5 4.5 7.5 8.5 white 2 1 NA
    39 #440154FF 4 9 1 1 3.5 4.5 8.5 9.5 white 2 1 NA
    40 #440154FF 4 10 1 1 3.5 4.5 9.5 10.5 white 2 1 NA
    41 #440154FF 5 1 1 1 4.5 5.5 0.5 1.5 white 2 1 NA
    42 #440154FF 5 2 1 1 4.5 5.5 1.5 2.5 white 2 1 NA
    43 #440154FF 5 3 1 1 4.5 5.5 2.5 3.5 white 2 1 NA
    44 #440154FF 5 4 1 1 4.5 5.5 3.5 4.5 white 2 1 NA
    45 #440154FF 5 5 1 1 4.5 5.5 4.5 5.5 white 2 1 NA
    46 #440154FF 5 6 1 1 4.5 5.5 5.5 6.5 white 2 1 NA
    47 #440154FF 5 7 1 1 4.5 5.5 6.5 7.5 white 2 1 NA
    48 #440154FF 5 8 1 1 4.5 5.5 7.5 8.5 white 2 1 NA
    49 #440154FF 5 9 1 1 4.5 5.5 8.5 9.5 white 2 1 NA
    50 #440154FF 5 10 1 1 4.5 5.5 9.5 10.5 white 2 1 NA
    51 #440154FF 6 1 1 1 5.5 6.5 0.5 1.5 white 2 1 NA
    52 #440154FF 6 2 1 1 5.5 6.5 1.5 2.5 white 2 1 NA
    53 #440154FF 6 3 1 1 5.5 6.5 2.5 3.5 white 2 1 NA
    54 #440154FF 6 4 1 1 5.5 6.5 3.5 4.5 white 2 1 NA
    55 #440154FF 6 5 1 1 5.5 6.5 4.5 5.5 white 2 1 NA
    56 #440154FF 6 6 1 1 5.5 6.5 5.5 6.5 white 2 1 NA
    57 #440154FF 6 7 1 1 5.5 6.5 6.5 7.5 white 2 1 NA
    58 #440154FF 6 8 1 1 5.5 6.5 7.5 8.5 white 2 1 NA
    59 #440154FF 6 9 1 1 5.5 6.5 8.5 9.5 white 2 1 NA
    60 #440154FF 6 10 1 1 5.5 6.5 9.5 10.5 white 2 1 NA
    61 #440154FF 7 1 1 1 6.5 7.5 0.5 1.5 white 2 1 NA
    62 #440154FF 7 2 1 1 6.5 7.5 1.5 2.5 white 2 1 NA
    63 #440154FF 7 3 1 1 6.5 7.5 2.5 3.5 white 2 1 NA
    64 #440154FF 7 4 1 1 6.5 7.5 3.5 4.5 white 2 1 NA
    65 #440154FF 7 5 1 1 6.5 7.5 4.5 5.5 white 2 1 NA
    66 #440154FF 7 6 1 1 6.5 7.5 5.5 6.5 white 2 1 NA
    67 #440154FF 7 7 1 1 6.5 7.5 6.5 7.5 white 2 1 NA
    68 #440154FF 7 8 1 1 6.5 7.5 7.5 8.5 white 2 1 NA
    69 #440154FF 7 9 1 1 6.5 7.5 8.5 9.5 white 2 1 NA
    70 #31688EFF 7 10 1 2 6.5 7.5 9.5 10.5 white 2 1 NA
    71 #31688EFF 8 1 1 2 7.5 8.5 0.5 1.5 white 2 1 NA
    72 #31688EFF 8 2 1 2 7.5 8.5 1.5 2.5 white 2 1 NA
    73 #31688EFF 8 3 1 2 7.5 8.5 2.5 3.5 white 2 1 NA
    74 #31688EFF 8 4 1 2 7.5 8.5 3.5 4.5 white 2 1 NA
    75 #31688EFF 8 5 1 2 7.5 8.5 4.5 5.5 white 2 1 NA
    76 #31688EFF 8 6 1 2 7.5 8.5 5.5 6.5 white 2 1 NA
    77 #31688EFF 8 7 1 2 7.5 8.5 6.5 7.5 white 2 1 NA
    78 #31688EFF 8 8 1 2 7.5 8.5 7.5 8.5 white 2 1 NA
    79 #31688EFF 8 9 1 2 7.5 8.5 8.5 9.5 white 2 1 NA
    80 #31688EFF 8 10 1 2 7.5 8.5 9.5 10.5 white 2 1 NA
    81 #31688EFF 9 1 1 2 8.5 9.5 0.5 1.5 white 2 1 NA
    82 #31688EFF 9 2 1 2 8.5 9.5 1.5 2.5 white 2 1 NA
    83 #31688EFF 9 3 1 2 8.5 9.5 2.5 3.5 white 2 1 NA
    84 #31688EFF 9 4 1 2 8.5 9.5 3.5 4.5 white 2 1 NA
    85 #31688EFF 9 5 1 2 8.5 9.5 4.5 5.5 white 2 1 NA
    86 #31688EFF 9 6 1 2 8.5 9.5 5.5 6.5 white 2 1 NA
    87 #31688EFF 9 7 1 2 8.5 9.5 6.5 7.5 white 2 1 NA
    88 #31688EFF 9 8 1 2 8.5 9.5 7.5 8.5 white 2 1 NA
    89 #31688EFF 9 9 1 2 8.5 9.5 8.5 9.5 white 2 1 NA
    90 #35B779FF 9 10 1 3 8.5 9.5 9.5 10.5 white 2 1 NA
    91 #35B779FF 10 1 1 3 9.5 10.5 0.5 1.5 white 2 1 NA
    92 #35B779FF 10 2 1 3 9.5 10.5 1.5 2.5 white 2 1 NA
    93 #35B779FF 10 3 1 3 9.5 10.5 2.5 3.5 white 2 1 NA
    94 #35B779FF 10 4 1 3 9.5 10.5 3.5 4.5 white 2 1 NA
    95 #35B779FF 10 5 1 3 9.5 10.5 4.5 5.5 white 2 1 NA
    96 #35B779FF 10 6 1 3 9.5 10.5 5.5 6.5 white 2 1 NA
    97 #35B779FF 10 7 1 3 9.5 10.5 6.5 7.5 white 2 1 NA
    98 #35B779FF 10 8 1 3 9.5 10.5 7.5 8.5 white 2 1 NA
    99 #35B779FF 10 9 1 3 9.5 10.5 8.5 9.5 white 2 1 NA
    100 #FDE725FF 10 10 1 4 9.5 10.5 9.5 10.5 white 2 1 NA
     width height
    1 NA NA
    2 NA NA
    3 NA NA
    4 NA NA
    5 NA NA
    6 NA NA
    7 NA NA
    8 NA NA
    9 NA NA
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    66 NA NA
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    69 NA NA
    70 NA NA
    71 NA NA
    72 NA NA
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    76 NA NA
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    80 NA NA
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    92 NA NA
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    94 NA NA
    95 NA NA
    96 NA NA
    97 NA NA
    98 NA NA
    99 NA NA
    100 NA NA
    
    
    $layout
    <ggproto object: Class Layout, gg>
     coord: <ggproto object: Class CoordFixed, CoordCartesian, Coord, gg>
     aspect: function
     backtransform_range: function
     clip: on
     default: FALSE
     distance: function
     expand: TRUE
     is_free: function
     is_linear: function
     labels: function
     limits: list
     modify_scales: function
     range: function
     ratio: 1
     render_axis_h: function
     render_axis_v: function
     render_bg: function
     render_fg: function
     setup_data: function
     setup_layout: function
     setup_panel_guides: function
     setup_panel_params: function
     setup_params: function
     train_panel_guides: function
     transform: function
     super: <ggproto object: Class CoordFixed, CoordCartesian, Coord, gg>
     coord_params: list
     facet: <ggproto object: Class FacetNull, Facet, gg>
     compute_layout: function
     draw_back: function
     draw_front: function
     draw_labels: function
     draw_panels: function
     finish_data: function
     init_scales: function
     map_data: function
     params: list
     setup_data: function
     setup_params: function
     shrink: TRUE
     train_scales: function
     vars: function
     super: <ggproto object: Class FacetNull, Facet, gg>
     facet_params: list
     finish_data: function
     get_scales: function
     layout: data.frame
     map_position: function
     panel_params: list
     panel_scales_x: list
     panel_scales_y: list
     render: function
     render_labels: function
     reset_scales: function
     setup: function
     setup_panel_guides: function
     setup_panel_params: function
     train_position: function
     xlabel: function
     ylabel: function
     super: <ggproto object: Class Layout, gg>
    
    $plot
    
     *** caught segfault ***
    address 0x2a, cause 'memory not mapped'
    
    Traceback:
     1: grid.Call.graphics(C_text, as.graphicsAnnot(x$label), x$x, x$y, resolveHJust(x$just, x$hjust), resolveVJust(x$just, x$vjust), x$rot, x$check.overlap)
     2: drawDetails.text(x, recording = FALSE)
     3: drawDetails(x, recording = FALSE)
     4: drawGrob(x)
     5: recordGraphics(drawGrob(x), list(x = x), getNamespace("grid"))
     6: grid.draw.grob(x$children[[i]], recording = FALSE)
     7: grid.draw(x$children[[i]], recording = FALSE)
     8: drawGTree(x)
     9: recordGraphics(drawGTree(x), list(x = x), getNamespace("grid"))
    10: grid.draw.gTree(x$children[[i]], recording = FALSE)
    11: grid.draw(x$children[[i]], recording = FALSE)
    12: drawGTree(x)
    13: recordGraphics(drawGTree(x), list(x = x), getNamespace("grid"))
    14: grid.draw.gTree(gtable)
    15: grid.draw(gtable)
    16: print.ggplot(x)
    17: (function (x, ...) UseMethod("print"))(x)
    18: print.default(x)
    19: (function (x, ...) UseMethod("print"))(x)
    An irrecoverable exception occurred. R is aborting now ...
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 0.4.9
Check: data for non-ASCII characters
Result: NOTE
     Note: found 6 marked UTF-8 strings
Flavors: r-devel-windows-x86_64-gcc10-UCRT, r-release-macos-arm64

Version: 0.5.0
Check: examples
Result: ERROR
    Running examples in ‘occCite-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: studyTaxonList
    > ### Title: Study Taxon List
    > ### Aliases: studyTaxonList
    >
    > ### ** Examples
    >
    > ## Inputting a vector of taxon names
    > studyTaxonList(
    + x = c(
    + "Buteo buteo",
    + "Buteo buteo hartedi",
    + "Buteo japonicus"
    + ),
    + datasources = c("National Center for Biotechnology Information")
    + )
    Error in curl::curl_fetch_memory(url, handle = handle) :
     SSL certificate problem: certificate has expired
    Calls: studyTaxonList ... request_fetch -> request_fetch.write_memory -> <Anonymous>
    Execution halted
Flavors: r-patched-solaris-x86, r-release-macos-x86_64, r-oldrel-macos-x86_64

Version: 0.5.0
Check: tests
Result: ERROR
     Running ‘testthat.R’ [69s/203s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(occCite)
     >
     > test_check("occCite")
     [1] "NOTE: 1 BIEN dataset(s) for Protea cynaroides is/are missing citation data. Key(s) missing citations are: 280. Source(s) are identified as: MO."
    
     OccCite query occurred on: 24 November, 2020
    
     User query type: User-supplied list of taxa.
    
     Sources for taxonomic rectification: NCBI
    
    
     Taxonomic cleaning results:
    
     Input Name Best Match Taxonomic Databases w/ Matches
     1 Protea cynaroides Protea cynaroides NCBI
    
     Sources for occurrence data: gbif, bien
    
     Species Occurrences Sources
     1 Protea cynaroides 1293 17
    
     GBIF dataset DOIs:
    
     Species GBIF Access Date GBIF DOI
     1 Protea cynaroides 2020-11-23 10.15468/dl.2449qy
    
     OccCite query occurred on: 24 November, 2020
    
     User query type: User-supplied list of taxa.
    
     Sources for taxonomic rectification: NCBI
    
    
     Taxonomic cleaning results:
    
     Input Name Best Match Taxonomic Databases w/ Matches
     1 Protea cynaroides Protea cynaroides NCBI
    
     Sources for occurrence data: gbif
    
     Species Occurrences Sources
     1 Protea cynaroides 1145 12
    
     GBIF dataset DOIs:
    
     Species GBIF Access Date GBIF DOI
     1 Protea cynaroides 2020-11-23 10.15468/dl.2449qy
    
     OccCite query occurred on: 24 November, 2020
    
     User query type: User-supplied list of taxa.
    
     Sources for taxonomic rectification: NCBI
    
    
     Taxonomic cleaning results:
    
     Input Name Best Match Taxonomic Databases w/ Matches
     1 Protea cynaroides Protea cynaroides NCBI
    
     Sources for occurrence data: bien
    
     Species Occurrences Sources
     1 Protea cynaroides 148 5
     ══ Skipped tests ═══════════════════════════════════════════════════════════════
     • GBIF Login information not available (1)
     • On CRAN (14)
    
     ══ Failed tests ════════════════════════════════════════════════════════════════
     ── Error (test-occCitePrint.R:8:1): (code run outside of `test_that()`) ────────
     Error in `curl::curl_fetch_memory(url, handle = handle)`: SSL certificate problem: certificate has expired
     Backtrace:
     █
     1. └─occCite::studyTaxonList(x = tree, datasources = "GBIF Backbone Taxonomy") test-occCitePrint.R:8:0
     2. ├─base::withCallingHandlers(...)
     3. └─occCite::taxonRectification(taxName = targets[[i]], datasources = datasources)
     4. ├─httr::http_error("https://resolver.globalnames.org/data_sources.json")
     5. └─httr:::http_error.character("https://resolver.globalnames.org/data_sources.json")
     6. ├─httr::http_error(HEAD(x, ...))
     7. └─httr::HEAD(x, ...)
     8. └─httr:::request_perform(req, hu$handle$handle)
     9. ├─httr:::request_fetch(req$output, req$url, handle)
     10. └─httr:::request_fetch.write_memory(req$output, req$url, handle)
     11. └─curl::curl_fetch_memory(url, handle = handle)
     ── Error (test-studyTaxonList.R:16:3): studyTaxonList works with a phylogeny ───
     Error in `curl::curl_fetch_memory(url, handle = handle)`: SSL certificate problem: certificate has expired
     Backtrace:
     █
     1. ├─testthat::skip_if(httr::http_error("https://resolver.globalnames.org/data_sources.json")) test-studyTaxonList.R:16:2
     2. │ └─base::isTRUE(condition)
     3. ├─httr::http_error("https://resolver.globalnames.org/data_sources.json")
     4. └─httr:::http_error.character("https://resolver.globalnames.org/data_sources.json")
     5. ├─httr::http_error(HEAD(x, ...))
     6. └─httr::HEAD(x, ...)
     7. └─httr:::request_perform(req, hu$handle$handle)
     8. ├─httr:::request_fetch(req$output, req$url, handle)
     9. └─httr:::request_fetch.write_memory(req$output, req$url, handle)
     10. └─curl::curl_fetch_memory(url, handle = handle)
     ── Error (test-studyTaxonList.R:48:3): studyTaxonList works with a vector of species ──
     Error in `curl::curl_fetch_memory(url, handle = handle)`: SSL certificate problem: certificate has expired
     Backtrace:
     █
     1. ├─testthat::skip_if(httr::http_error("https://resolver.globalnames.org/data_sources.json")) test-studyTaxonList.R:48:2
     2. │ └─base::isTRUE(condition)
     3. ├─httr::http_error("https://resolver.globalnames.org/data_sources.json")
     4. └─httr:::http_error.character("https://resolver.globalnames.org/data_sources.json")
     5. ├─httr::http_error(HEAD(x, ...))
     6. └─httr::HEAD(x, ...)
     7. └─httr:::request_perform(req, hu$handle$handle)
     8. ├─httr:::request_fetch(req$output, req$url, handle)
     9. └─httr:::request_fetch.write_memory(req$output, req$url, handle)
     10. └─curl::curl_fetch_memory(url, handle = handle)
     ── Error (test-taxonRectification.R:6:3): functions on which it depends function as necessary ──
     Error in `curl::curl_fetch_memory(url, handle = handle)`: SSL certificate problem: certificate has expired
     Backtrace:
     █
     1. ├─testthat::skip_if(httr::http_error("https://resolver.globalnames.org/data_sources.json")) test-taxonRectification.R:6:2
     2. │ └─base::isTRUE(condition)
     3. ├─httr::http_error("https://resolver.globalnames.org/data_sources.json")
     4. └─httr:::http_error.character("https://resolver.globalnames.org/data_sources.json")
     5. ├─httr::http_error(HEAD(x, ...))
     6. └─httr::HEAD(x, ...)
     7. └─httr:::request_perform(req, hu$handle$handle)
     8. ├─httr:::request_fetch(req$output, req$url, handle)
     9. └─httr:::request_fetch.write_memory(req$output, req$url, handle)
     10. └─curl::curl_fetch_memory(url, handle = handle)
     ── Error (test-taxonRectification.R:29:3): taxonRectification performs as expected ──
     Error in `curl::curl_fetch_memory(url, handle = handle)`: SSL certificate problem: certificate has expired
     Backtrace:
     █
     1. ├─testthat::skip_if(httr::http_error("https://resolver.globalnames.org/data_sources.json")) test-taxonRectification.R:29:2
     2. │ └─base::isTRUE(condition)
     3. ├─httr::http_error("https://resolver.globalnames.org/data_sources.json")
     4. └─httr:::http_error.character("https://resolver.globalnames.org/data_sources.json")
     5. ├─httr::http_error(HEAD(x, ...))
     6. └─httr::HEAD(x, ...)
     7. └─httr:::request_perform(req, hu$handle$handle)
     8. ├─httr:::request_fetch(req$output, req$url, handle)
     9. └─httr:::request_fetch.write_memory(req$output, req$url, handle)
     10. └─curl::curl_fetch_memory(url, handle = handle)
    
     [ FAIL 5 | WARN 0 | SKIP 15 | PASS 147 ]
     Error: Test failures
     Execution halted
Flavor: r-patched-solaris-x86

Version: 0.5.0
Check: tests
Result: ERROR
     Running ‘testthat.R’ [0m/12m]
    Running the tests in ‘tests/testthat.R’ failed.
    Last 13 lines of output:
     █
     1. ├─testthat::skip_if(httr::http_error("https://resolver.globalnames.org/data_sources.json")) test-taxonRectification.R:29:2
     2. │ └─base::isTRUE(condition)
     3. ├─httr::http_error("https://resolver.globalnames.org/data_sources.json")
     4. └─httr:::http_error.character("https://resolver.globalnames.org/data_sources.json")
     5. ├─httr::http_error(HEAD(x, ...))
     6. └─httr::HEAD(x, ...)
     7. └─httr:::request_perform(req, hu$handle$handle)
     8. ├─httr:::request_fetch(req$output, req$url, handle)
     9. └─httr:::request_fetch.write_memory(req$output, req$url, handle)
     10. └─curl::curl_fetch_memory(url, handle = handle)
    
     [ FAIL 5 | WARN 0 | SKIP 15 | PASS 147 ]
     Error: Test failures
     Execution halted
Flavors: r-release-macos-x86_64, r-oldrel-macos-x86_64