CRAN Package Check Results for Package plethem

Last updated on 2020-02-24 22:50:32 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.1.7 19.84 124.53 144.37 ERROR
r-devel-linux-x86_64-debian-gcc 0.1.7 16.50 95.86 112.36 ERROR
r-devel-linux-x86_64-fedora-clang 0.1.7 141.53 ERROR
r-devel-linux-x86_64-fedora-gcc 0.1.7 99.31 ERROR
r-devel-windows-ix86+x86_64 0.1.7 45.00 166.00 211.00 WARN
r-devel-windows-ix86+x86_64-gcc8 0.1.7 68.00 174.00 242.00 WARN
r-patched-linux-x86_64 0.1.7 15.91 108.54 124.45 NOTE
r-patched-solaris-x86 0.1.7 220.70 NOTE
r-release-linux-x86_64 0.1.7 17.14 108.45 125.59 NOTE
r-release-windows-ix86+x86_64 0.1.7 35.00 156.00 191.00 NOTE
r-release-osx-x86_64 0.1.7 NOTE
r-oldrel-windows-ix86+x86_64 0.1.7 25.00 164.00 189.00 NOTE
r-oldrel-osx-x86_64 0.1.7 NOTE

Check Details

Version: 0.1.7
Check: R code for possible problems
Result: NOTE
    importHTTKData: no visible global function definition for
     'calc_hepatic_clearance'
    Undefined global functions or variables:
     calc_hepatic_clearance
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.1.7
Check: tests
Result: ERROR
     Running 'testthat.R' [6s/7s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > library(testthat)
     > library(plethem)
     You are now using PLETHEM.
     If you have installed PLETHEM for the first time or have just updated it, please run setUserDb() to select an existing database or createUserDb() to create a new one.
     >
     > test_check("plethem")
     -- 1. Error: Tissue volumes are less than 85% of body weight (@test_physio.R#19)
     invalid 'type' (list) of argument
     Backtrace:
     1. plethem::getLifecourseTissueVolumes(...)
    
     == testthat results ===========================================================
     [ OK: 8 | SKIPPED: 0 | WARNINGS: 1 | FAILED: 1 ]
     1. Error: Tissue volumes are less than 85% of body weight (@test_physio.R#19)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-linux-x86_64-debian-clang

Version: 0.1.7
Check: package vignettes
Result: NOTE
    Package vignette with placeholder title 'Vignette Title':
     'getting_started.Rmd'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-ix86+x86_64, r-devel-windows-ix86+x86_64-gcc8

Version: 0.1.7
Check: tests
Result: ERROR
     Running ‘testthat.R’ [4s/6s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(plethem)
     You are now using PLETHEM.
     If you have installed PLETHEM for the first time or have just updated it, please run setUserDb() to select an existing database or createUserDb() to create a new one.
     >
     > test_check("plethem")
     ── 1. Error: Tissue volumes are less than 85% of body weight (@test_physio.R#19)
     invalid 'type' (list) of argument
     Backtrace:
     1. plethem::getLifecourseTissueVolumes(...)
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     [ OK: 8 | SKIPPED: 0 | WARNINGS: 1 | FAILED: 1 ]
     1. Error: Tissue volumes are less than 85% of body weight (@test_physio.R#19)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.1.7
Check: package dependencies
Result: NOTE
    Imports includes 26 non-default packages.
    Importing from so many packages makes the package vulnerable to any of
    them becoming unavailable. Move as many as possible to Suggests and
    use conditionally.
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 0.1.7
Check: dependencies in R code
Result: NOTE
    Namespaces in Imports field not imported from:
     ‘V8’ ‘devtools’ ‘formatR’ ‘gdata’ ‘rhandsontable’ ‘shinythemes’
     ‘sqldf’
     All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-x86, r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 0.1.7
Check: tests
Result: ERROR
     Running ‘testthat.R’
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(plethem)
     You are now using PLETHEM.
     If you have installed PLETHEM for the first time or have just updated it, please run setUserDb() to select an existing database or createUserDb() to create a new one.
     >
     > test_check("plethem")
     ── 1. Error: Tissue volumes are less than 85% of body weight (@test_physio.R#19)
     invalid 'type' (list) of argument
     Backtrace:
     1. plethem::getLifecourseTissueVolumes(...)
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     [ OK: 8 | SKIPPED: 0 | WARNINGS: 1 | FAILED: 1 ]
     1. Error: Tissue volumes are less than 85% of body weight (@test_physio.R#19)
    
     Error: testthat unit tests failed
     Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 0.1.7
Check: R files for syntax errors
Result: WARN
    Warnings in file 'R/HT_IVIVE_InputModule.R':
     unable to translate ' <U+03BC>m' to native encoding
     unable to translate '<U+03BC>mol/min/mg Protein' to native encoding
     unable to translate '<U+03BC>L/min/mg Protein' to native encoding
     unable to translate '<U+03BC>L/h/mg Protein' to native encoding
     unable to translate '<U+03BC>L/min/mg Protein' to native encoding
     unable to translate '<U+03BC>L/h/mg Protein' to native encoding
     unable to translate '<U+03BC>L/min/mg Protein' to native encoding
     unable to translate '<U+03BC>L/h/mg Protein' to native encoding
    
    Warnings in file 'R/IVIVEGadget.R':
     unable to translate '<U+03BC>L/min/mg Protein' to native encoding
     unable to translate '<U+03BC>L/h/mg Protein' to native encoding
     unable to translate '<U+03BC>mol/min/mg Protein' to native encoding
     unable to translate '<U+03BC>L/min/mg Protein' to native encoding
     unable to translate '<U+03BC>L/h/mg Protein' to native encoding
     unable to translate '<U+03BC>L/min/mg Protein' to native encoding
     unable to translate '<U+03BC>L/h/mg Protein' to native encoding
    
    Warnings in file 'R/performIVIVEModule.R':
     unable to translate '<U+03BC>mol/min/10^6 hepatocytes' to native encoding
     unable to translate '<U+03BC>mol/min/mg Protein' to native encoding
     unable to translate '<U+03BC>L/min/mg Protein' to native encoding
     unable to translate '<U+03BC>L/h/mg Protein' to native encoding
     unable to translate '<U+03BC>L/min/mg Protein' to native encoding
     unable to translate '<U+03BC>L/h/mg Protein' to native encoding
     unable to translate '<U+03BC>L/min/mg Protein' to native encoding
     unable to translate '<U+03BC>L/h/mg Protein' to native encoding
Flavors: r-devel-windows-ix86+x86_64, r-devel-windows-ix86+x86_64-gcc8