CRAN Package Check Results for Package rmzqc

Last updated on 2025-02-18 22:52:12 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.5.4 7.26 78.30 85.56 ERROR
r-devel-linux-x86_64-debian-gcc 0.5.4 5.31 55.68 60.99 ERROR
r-devel-linux-x86_64-fedora-clang 0.5.4 149.76 ERROR
r-devel-linux-x86_64-fedora-gcc 0.5.4 144.76 ERROR
r-devel-macos-arm64 0.5.4 63.00 OK
r-devel-macos-x86_64 0.5.4 99.00 OK
r-devel-windows-x86_64 0.5.4 11.00 103.00 114.00 ERROR
r-patched-linux-x86_64 0.5.4 7.63 74.16 81.79 ERROR
r-release-linux-x86_64 0.5.4 7.06 75.15 82.21 ERROR
r-release-macos-arm64 0.5.4 57.00 OK
r-release-macos-x86_64 0.5.4 99.00 OK
r-release-windows-x86_64 0.5.4 10.00 104.00 114.00 ERROR
r-oldrel-macos-arm64 0.5.4 71.00 OK
r-oldrel-macos-x86_64 0.5.4 100.00 OK
r-oldrel-windows-x86_64 0.5.4 13.00 114.00 127.00 ERROR

Check Details

Version: 0.5.4
Check: tests
Result: ERROR Running ‘testthat.R’ [15s/21s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(rmzqc) > > test_check("rmzqc") Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_. trying URL 'https://api.github.com/repos/HUPO-PSI/psi-ms-CV/releases/latest' Content type 'application/json; charset=utf-8' length 7324 bytes ================================================== downloaded 7324 bytes Downloading obo from 'https://github.com/HUPO-PSI/psi-ms-CV/releases/download/v4.1.191/psi-ms.obo' ... trying URL 'https://github.com/HUPO-PSI/psi-ms-CV/releases/download/v4.1.191/psi-ms.obo' Content type 'application/octet-stream' length 1008314 bytes (984 KB) ================================================== downloaded 984 KB Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_. trying URL 'https://api.github.com/repos/HUPO-PSI/psi-ms-CV/releases/latest' Content type 'application/json; charset=utf-8' length 7324 bytes ================================================== downloaded 7324 bytes Downloading obo from 'https://github.com/HUPO-PSI/psi-ms-CV/releases/download/v4.1.191/psi-ms.obo' ... trying URL 'https://github.com/HUPO-PSI/psi-ms-CV/releases/download/v4.1.191/psi-ms.obo' Content type 'application/octet-stream' length 1008314 bytes (984 KB) ================================================== downloaded 984 KB Downloading obo from 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo' ... trying URL 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo' Error in download.file(custom_uri, tmp_filename) : cannot open URL 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo' Downloading obo from 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo' ... trying URL 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo' Error in download.file(custom_uri, tmp_filename) : cannot open URL 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo' Error in getCVDictionary(source = "custom", custom_uri = "https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo", : Download failed. trying URL 'https://api.github.com/repos/HUPO-PSI/psi-ms-CV/releases/latest' Content type 'application/json; charset=utf-8' length 7324 bytes ================================================== downloaded 7324 bytes Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_. Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_. Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_. Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_. Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_. [ FAIL 2 | WARN 14 | SKIP 0 | PASS 87 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test_conversion.R:17:3'): toQCMetric = function(id, value, on_violation = c("error", "warn")) ── `toQCMetric(id = "MS:4000059", value = 13405)` produced messages. ── Failure ('test_conversion.R:18:3'): toQCMetric = function(id, value, on_violation = c("error", "warn")) ── `toQCMetric(id = "MS:4000059", value = "13405")` produced messages. [ FAIL 2 | WARN 14 | SKIP 0 | PASS 87 ] Error: Test failures Execution halted Flavor: r-devel-linux-x86_64-debian-clang

Version: 0.5.4
Check: tests
Result: ERROR Running ‘testthat.R’ [10s/15s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(rmzqc) > > test_check("rmzqc") Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_. trying URL 'https://api.github.com/repos/HUPO-PSI/psi-ms-CV/releases/latest' Content type 'application/json; charset=utf-8' length 7324 bytes ================================================== downloaded 7324 bytes Downloading obo from 'https://github.com/HUPO-PSI/psi-ms-CV/releases/download/v4.1.191/psi-ms.obo' ... trying URL 'https://github.com/HUPO-PSI/psi-ms-CV/releases/download/v4.1.191/psi-ms.obo' Content type 'application/octet-stream' length 1008314 bytes (984 KB) ================================================== downloaded 984 KB Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_. trying URL 'https://api.github.com/repos/HUPO-PSI/psi-ms-CV/releases/latest' Content type 'application/json; charset=utf-8' length 7324 bytes ================================================== downloaded 7324 bytes Downloading obo from 'https://github.com/HUPO-PSI/psi-ms-CV/releases/download/v4.1.191/psi-ms.obo' ... trying URL 'https://github.com/HUPO-PSI/psi-ms-CV/releases/download/v4.1.191/psi-ms.obo' Content type 'application/octet-stream' length 1008314 bytes (984 KB) ================================================== downloaded 984 KB Downloading obo from 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo' ... trying URL 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo' Error in download.file(custom_uri, tmp_filename) : cannot open URL 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo' Downloading obo from 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo' ... trying URL 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo' Error in download.file(custom_uri, tmp_filename) : cannot open URL 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo' Error in getCVDictionary(source = "custom", custom_uri = "https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo", : Download failed. trying URL 'https://api.github.com/repos/HUPO-PSI/psi-ms-CV/releases/latest' Content type 'application/json; charset=utf-8' length 7324 bytes ================================================== downloaded 7324 bytes Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_. Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_. Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_. Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_. Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_. [ FAIL 2 | WARN 14 | SKIP 0 | PASS 87 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test_conversion.R:17:3'): toQCMetric = function(id, value, on_violation = c("error", "warn")) ── `toQCMetric(id = "MS:4000059", value = 13405)` produced messages. ── Failure ('test_conversion.R:18:3'): toQCMetric = function(id, value, on_violation = c("error", "warn")) ── `toQCMetric(id = "MS:4000059", value = "13405")` produced messages. [ FAIL 2 | WARN 14 | SKIP 0 | PASS 87 ] Error: Test failures Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.5.4
Check: tests
Result: ERROR Running ‘testthat.R’ [26s/83s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(rmzqc) > > test_check("rmzqc") Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_. trying URL 'https://api.github.com/repos/HUPO-PSI/psi-ms-CV/releases/latest' downloaded 7324 bytes Downloading obo from 'https://github.com/HUPO-PSI/psi-ms-CV/releases/download/v4.1.191/psi-ms.obo' ... trying URL 'https://github.com/HUPO-PSI/psi-ms-CV/releases/download/v4.1.191/psi-ms.obo' Content type 'application/octet-stream' length 1008314 bytes (984 KB) ================================================== downloaded 984 KB Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_. trying URL 'https://api.github.com/repos/HUPO-PSI/psi-ms-CV/releases/latest' Content type 'application/json; charset=utf-8' length 7324 bytes ================================================== downloaded 7324 bytes Downloading obo from 'https://github.com/HUPO-PSI/psi-ms-CV/releases/download/v4.1.191/psi-ms.obo' ... trying URL 'https://github.com/HUPO-PSI/psi-ms-CV/releases/download/v4.1.191/psi-ms.obo' Content type 'application/octet-stream' length 1008314 bytes (984 KB) ================================================== downloaded 984 KB Downloading obo from 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo' ... trying URL 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo' Error in download.file(custom_uri, tmp_filename) : cannot open URL 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo' Downloading obo from 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo' ... trying URL 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo' Error in download.file(custom_uri, tmp_filename) : cannot open URL 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo' Error in getCVDictionary(source = "custom", custom_uri = "https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo", : Download failed. trying URL 'https://api.github.com/repos/HUPO-PSI/psi-ms-CV/releases/latest' Content type 'application/json; charset=utf-8' length 7324 bytes ================================================== downloaded 7324 bytes Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_. Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_. Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_. Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_. Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_. [ FAIL 2 | WARN 16 | SKIP 0 | PASS 87 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test_conversion.R:17:3'): toQCMetric = function(id, value, on_violation = c("error", "warn")) ── `toQCMetric(id = "MS:4000059", value = 13405)` produced messages. ── Failure ('test_conversion.R:18:3'): toQCMetric = function(id, value, on_violation = c("error", "warn")) ── `toQCMetric(id = "MS:4000059", value = "13405")` produced messages. [ FAIL 2 | WARN 16 | SKIP 0 | PASS 87 ] Error: Test failures Execution halted Flavor: r-devel-linux-x86_64-fedora-clang

Version: 0.5.4
Check: tests
Result: ERROR Running ‘testthat.R’ [23s/29s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(rmzqc) > > test_check("rmzqc") Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_. trying URL 'https://api.github.com/repos/HUPO-PSI/psi-ms-CV/releases/latest' Content type 'application/json; charset=utf-8' length 7324 bytes ================================================== downloaded 7324 bytes Downloading obo from 'https://github.com/HUPO-PSI/psi-ms-CV/releases/download/v4.1.191/psi-ms.obo' ... trying URL 'https://github.com/HUPO-PSI/psi-ms-CV/releases/download/v4.1.191/psi-ms.obo' Content type 'application/octet-stream' length 1008314 bytes (984 KB) ================================================== downloaded 984 KB Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_. trying URL 'https://api.github.com/repos/HUPO-PSI/psi-ms-CV/releases/latest' Content type 'application/json; charset=utf-8' length 7324 bytes ================================================== downloaded 7324 bytes Downloading obo from 'https://github.com/HUPO-PSI/psi-ms-CV/releases/download/v4.1.191/psi-ms.obo' ... trying URL 'https://github.com/HUPO-PSI/psi-ms-CV/releases/download/v4.1.191/psi-ms.obo' Content type 'application/octet-stream' length 1008314 bytes (984 KB) ================================================== downloaded 984 KB Downloading obo from 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo' ... trying URL 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo' Error in download.file(custom_uri, tmp_filename) : cannot open URL 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo' Downloading obo from 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo' ... trying URL 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo' Error in download.file(custom_uri, tmp_filename) : cannot open URL 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo' Error in getCVDictionary(source = "custom", custom_uri = "https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo", : Download failed. trying URL 'https://api.github.com/repos/HUPO-PSI/psi-ms-CV/releases/latest' Content type 'application/json; charset=utf-8' length 7324 bytes ================================================== downloaded 7324 bytes Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_. Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_. Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_. Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_. Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_. [ FAIL 2 | WARN 16 | SKIP 0 | PASS 87 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test_conversion.R:17:3'): toQCMetric = function(id, value, on_violation = c("error", "warn")) ── `toQCMetric(id = "MS:4000059", value = 13405)` produced messages. ── Failure ('test_conversion.R:18:3'): toQCMetric = function(id, value, on_violation = c("error", "warn")) ── `toQCMetric(id = "MS:4000059", value = "13405")` produced messages. [ FAIL 2 | WARN 16 | SKIP 0 | PASS 87 ] Error: Test failures Execution halted Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 0.5.4
Check: tests
Result: ERROR Running 'testthat.R' [13s] Running the tests in 'tests/testthat.R' failed. Complete output: > library(testthat) > library(rmzqc) > > test_check("rmzqc") Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_. trying URL 'https://api.github.com/repos/HUPO-PSI/psi-ms-CV/releases/latest' Content type 'application/json; charset=utf-8' length 7324 bytes ================================================== downloaded 7324 bytes Downloading obo from 'https://github.com/HUPO-PSI/psi-ms-CV/releases/download/v4.1.191/psi-ms.obo' ... trying URL 'https://github.com/HUPO-PSI/psi-ms-CV/releases/download/v4.1.191/psi-ms.obo' Content type 'application/octet-stream' length 1008314 bytes (984 KB) ================================================== downloaded 984 KB Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_. trying URL 'https://api.github.com/repos/HUPO-PSI/psi-ms-CV/releases/latest' Content type 'application/json; charset=utf-8' length 7324 bytes ================================================== downloaded 7324 bytes Downloading obo from 'https://github.com/HUPO-PSI/psi-ms-CV/releases/download/v4.1.191/psi-ms.obo' ... trying URL 'https://github.com/HUPO-PSI/psi-ms-CV/releases/download/v4.1.191/psi-ms.obo' Content type 'application/octet-stream' length 1008314 bytes (984 KB) ================================================== downloaded 984 KB Downloading obo from 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo' ... trying URL 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo' Error in download.file(custom_uri, tmp_filename) : cannot open URL 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo' Downloading obo from 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo' ... trying URL 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo' Error in download.file(custom_uri, tmp_filename) : cannot open URL 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo' Error in getCVDictionary(source = "custom", custom_uri = "https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo", : Download failed. trying URL 'https://api.github.com/repos/HUPO-PSI/psi-ms-CV/releases/latest' Content type 'application/json; charset=utf-8' length 7324 bytes ================================================== downloaded 7324 bytes Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_. Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_. Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_. Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_. Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_. [ FAIL 2 | WARN 14 | SKIP 0 | PASS 87 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test_conversion.R:17:3'): toQCMetric = function(id, value, on_violation = c("error", "warn")) ── `toQCMetric(id = "MS:4000059", value = 13405)` produced messages. ── Failure ('test_conversion.R:18:3'): toQCMetric = function(id, value, on_violation = c("error", "warn")) ── `toQCMetric(id = "MS:4000059", value = "13405")` produced messages. [ FAIL 2 | WARN 14 | SKIP 0 | PASS 87 ] Error: Test failures Execution halted Flavors: r-devel-windows-x86_64, r-release-windows-x86_64

Version: 0.5.4
Check: tests
Result: ERROR Running ‘testthat.R’ [14s/19s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(rmzqc) > > test_check("rmzqc") Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_. trying URL 'https://api.github.com/repos/HUPO-PSI/psi-ms-CV/releases/latest' Content type 'application/json; charset=utf-8' length 7324 bytes ================================================== downloaded 7324 bytes Downloading obo from 'https://github.com/HUPO-PSI/psi-ms-CV/releases/download/v4.1.191/psi-ms.obo' ... trying URL 'https://github.com/HUPO-PSI/psi-ms-CV/releases/download/v4.1.191/psi-ms.obo' Content type 'application/octet-stream' length 1008314 bytes (984 KB) ================================================== downloaded 984 KB Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_. trying URL 'https://api.github.com/repos/HUPO-PSI/psi-ms-CV/releases/latest' Content type 'application/json; charset=utf-8' length 7324 bytes ================================================== downloaded 7324 bytes Downloading obo from 'https://github.com/HUPO-PSI/psi-ms-CV/releases/download/v4.1.191/psi-ms.obo' ... trying URL 'https://github.com/HUPO-PSI/psi-ms-CV/releases/download/v4.1.191/psi-ms.obo' Content type 'application/octet-stream' length 1008314 bytes (984 KB) ================================================== downloaded 984 KB Downloading obo from 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo' ... trying URL 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo' Error in download.file(custom_uri, tmp_filename) : cannot open URL 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo' Downloading obo from 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo' ... trying URL 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo' Error in download.file(custom_uri, tmp_filename) : cannot open URL 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo' Error in getCVDictionary(source = "custom", custom_uri = "https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo", : Download failed. trying URL 'https://api.github.com/repos/HUPO-PSI/psi-ms-CV/releases/latest' Content type 'application/json; charset=utf-8' length 7324 bytes ================================================== downloaded 7324 bytes Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_. Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_. Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_. Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_. Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_. [ FAIL 2 | WARN 14 | SKIP 0 | PASS 87 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test_conversion.R:17:3'): toQCMetric = function(id, value, on_violation = c("error", "warn")) ── `toQCMetric(id = "MS:4000059", value = 13405)` produced messages. ── Failure ('test_conversion.R:18:3'): toQCMetric = function(id, value, on_violation = c("error", "warn")) ── `toQCMetric(id = "MS:4000059", value = "13405")` produced messages. [ FAIL 2 | WARN 14 | SKIP 0 | PASS 87 ] Error: Test failures Execution halted Flavor: r-patched-linux-x86_64

Version: 0.5.4
Check: tests
Result: ERROR Running ‘testthat.R’ [15s/20s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(rmzqc) > > test_check("rmzqc") Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_. trying URL 'https://api.github.com/repos/HUPO-PSI/psi-ms-CV/releases/latest' Content type 'application/json; charset=utf-8' length 7324 bytes ================================================== downloaded 7324 bytes Downloading obo from 'https://github.com/HUPO-PSI/psi-ms-CV/releases/download/v4.1.191/psi-ms.obo' ... trying URL 'https://github.com/HUPO-PSI/psi-ms-CV/releases/download/v4.1.191/psi-ms.obo' Content type 'application/octet-stream' length 1008314 bytes (984 KB) ================================================== downloaded 984 KB Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_. trying URL 'https://api.github.com/repos/HUPO-PSI/psi-ms-CV/releases/latest' Content type 'application/json; charset=utf-8' length 7324 bytes ================================================== downloaded 7324 bytes Downloading obo from 'https://github.com/HUPO-PSI/psi-ms-CV/releases/download/v4.1.191/psi-ms.obo' ... trying URL 'https://github.com/HUPO-PSI/psi-ms-CV/releases/download/v4.1.191/psi-ms.obo' Content type 'application/octet-stream' length 1008314 bytes (984 KB) ================================================== downloaded 984 KB Downloading obo from 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo' ... trying URL 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo' Error in download.file(custom_uri, tmp_filename) : cannot open URL 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo' Downloading obo from 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo' ... trying URL 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo' Error in download.file(custom_uri, tmp_filename) : cannot open URL 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo' Error in getCVDictionary(source = "custom", custom_uri = "https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo", : Download failed. trying URL 'https://api.github.com/repos/HUPO-PSI/psi-ms-CV/releases/latest' Content type 'application/json; charset=utf-8' length 7324 bytes ================================================== downloaded 7324 bytes Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_. Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_. Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_. Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_. Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_. [ FAIL 2 | WARN 14 | SKIP 0 | PASS 87 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test_conversion.R:17:3'): toQCMetric = function(id, value, on_violation = c("error", "warn")) ── `toQCMetric(id = "MS:4000059", value = 13405)` produced messages. ── Failure ('test_conversion.R:18:3'): toQCMetric = function(id, value, on_violation = c("error", "warn")) ── `toQCMetric(id = "MS:4000059", value = "13405")` produced messages. [ FAIL 2 | WARN 14 | SKIP 0 | PASS 87 ] Error: Test failures Execution halted Flavor: r-release-linux-x86_64

Version: 0.5.4
Check: tests
Result: ERROR Running 'testthat.R' [16s] Running the tests in 'tests/testthat.R' failed. Complete output: > library(testthat) > library(rmzqc) > > test_check("rmzqc") Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_. trying URL 'https://api.github.com/repos/HUPO-PSI/psi-ms-CV/releases/latest' Content type 'application/json; charset=utf-8' length 7324 bytes ================================================== downloaded 7324 bytes Downloading obo from 'https://github.com/HUPO-PSI/psi-ms-CV/releases/download/v4.1.191/psi-ms.obo' ... trying URL 'https://github.com/HUPO-PSI/psi-ms-CV/releases/download/v4.1.191/psi-ms.obo' Content type 'application/octet-stream' length 1008314 bytes (984 KB) ================================================== downloaded 984 KB Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_. trying URL 'https://api.github.com/repos/HUPO-PSI/psi-ms-CV/releases/latest' Content type 'application/json; charset=utf-8' length 7324 bytes ================================================== downloaded 7324 bytes Downloading obo from 'https://github.com/HUPO-PSI/psi-ms-CV/releases/download/v4.1.191/psi-ms.obo' ... trying URL 'https://github.com/HUPO-PSI/psi-ms-CV/releases/download/v4.1.191/psi-ms.obo' Content type 'application/octet-stream' length 1008314 bytes (984 KB) ================================================== downloaded 984 KB Downloading obo from 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo' ... trying URL 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo' Error in download.file(custom_uri, tmp_filename) : cannot open URL 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo' Downloading obo from 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo' ... trying URL 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo' Error in download.file(custom_uri, tmp_filename) : cannot open URL 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo' Error in getCVDictionary(source = "custom", custom_uri = "https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo", : Download failed. trying URL 'https://api.github.com/repos/HUPO-PSI/psi-ms-CV/releases/latest' Content type 'application/json; charset=utf-8' length 7324 bytes ================================================== downloaded 7324 bytes Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_. Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_. Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_. Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_. Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_. [ FAIL 2 | WARN 16 | SKIP 0 | PASS 87 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test_conversion.R:17:3'): toQCMetric = function(id, value, on_violation = c("error", "warn")) ── `toQCMetric(id = "MS:4000059", value = 13405)` produced messages. ── Failure ('test_conversion.R:18:3'): toQCMetric = function(id, value, on_violation = c("error", "warn")) ── `toQCMetric(id = "MS:4000059", value = "13405")` produced messages. [ FAIL 2 | WARN 16 | SKIP 0 | PASS 87 ] Error: Test failures Execution halted Flavor: r-oldrel-windows-x86_64