Last updated on 2023-09-30 22:59:20 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.7.0 | 11.58 | 201.33 | 212.91 | OK | |
| r-devel-linux-x86_64-debian-gcc | 2.7.0 | 9.99 | 144.68 | 154.67 | OK | |
| r-devel-linux-x86_64-fedora-clang | 2.7.0 | 260.73 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 2.7.0 | 262.92 | OK | |||
| r-devel-windows-x86_64 | 2.7.0 | 12.00 | 317.00 | 329.00 | OK | |
| r-patched-linux-x86_64 | 2.7.0 | 12.81 | 194.55 | 207.36 | OK | |
| r-release-linux-x86_64 | 2.7.0 | 10.56 | 195.52 | 206.08 | OK | |
| r-release-macos-arm64 | 2.7.0 | 49.00 | ERROR | |||
| r-release-macos-x86_64 | 2.7.0 | 122.00 | ERROR | |||
| r-release-windows-x86_64 | 2.7.0 | 16.00 | 397.00 | 413.00 | OK | |
| r-oldrel-macos-arm64 | 2.7.0 | 253.00 | OK | |||
| r-oldrel-macos-x86_64 | 2.7.0 | 307.00 | OK | |||
| r-oldrel-windows-x86_64 | 2.7.0 | 18.00 | 398.00 | 416.00 | OK |
Version: 2.7.0
Check: examples
Result: ERROR
Running examples in ‘speaq-Ex.R’ failed
The error most likely occurred in:
> ### Name: BWR
> ### Title: BW ratio calculation
> ### Aliases: BWR
>
> ### ** Examples
>
> res=makeSimulatedData();
> X=res$data;
> groupLabel=res$label;
> peakList <- detectSpecPeaks(X,
+ nDivRange = c(128),
+ scales = seq(1, 16, 2),
+ baselineThresh = 50000,
+ SNR.Th = -1,
+ verbose=FALSE
+ );
> resFindRef<- findRef(peakList);
> refInd <- resFindRef$refInd;
> maxShift = 50;
> Y <- dohCluster(X,
+ peakList = peakList,
+ refInd = refInd,
+ maxShift = maxShift,
+ acceptLostPeak = TRUE, verbose=FALSE);
Warning in min(peakList) :
no non-missing arguments to min; returning Inf
Warning in max(peakList) :
no non-missing arguments to max; returning -Inf
Error in startP:(minpeakList - 1) : result would be too long a vector
Calls: dohCluster -> .withMaxShift -> hClustAlign
Execution halted
Flavors: r-release-macos-arm64, r-release-macos-x86_64
Version: 2.7.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘classic_speaq_vignette.Rmd’ using rmarkdown
Quitting from lines 111-120 (classic_speaq_vignette.Rmd)
Error: processing vignette 'classic_speaq_vignette.Rmd' failed with diagnostics:
result would be too long a vector
--- failed re-building ‘classic_speaq_vignette.Rmd’
--- re-building ‘speaq2_illustrations.Rmd’ using rmarkdown
Quitting from lines 71-83 (speaq2_illustrations.Rmd)
Error: processing vignette 'speaq2_illustrations.Rmd' failed with diagnostics:
invalid 'times' argument
--- failed re-building ‘speaq2_illustrations.Rmd’
SUMMARY: processing the following files failed:
‘classic_speaq_vignette.Rmd’ ‘speaq2_illustrations.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-macos-arm64
Version: 2.7.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘classic_speaq_vignette.Rmd’ using rmarkdown
Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed.
2023-07-10 23:48:34.091 R[19637:2290508776] XType: Using static font registry.
Quitting from lines 111-120 [Spectral_alignment] (classic_speaq_vignette.Rmd)
Error: processing vignette 'classic_speaq_vignette.Rmd' failed with diagnostics:
result would be too long a vector
--- failed re-building ‘classic_speaq_vignette.Rmd’
--- re-building ‘speaq2_illustrations.Rmd’ using rmarkdown
Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed.
2023-07-10 23:48:40.223 R[20964:2290511430] XType: Using static font registry.
Quitting from lines 71-83 [detect winepeaks] (speaq2_illustrations.Rmd)
Error: processing vignette 'speaq2_illustrations.Rmd' failed with diagnostics:
invalid 'times' argument
--- failed re-building ‘speaq2_illustrations.Rmd’
SUMMARY: processing the following files failed:
‘classic_speaq_vignette.Rmd’ ‘speaq2_illustrations.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-macos-x86_64