CeRNASeek: Identification and Analysis of ceRNA Regulation

Provides several functions to identify and analyse miRNA sponge, including popular methods for identifying miRNA sponge interactions, two types of global ceRNA regulation prediction methods and four types of context-specific prediction methods( Li Y et al.(2017) <doi:10.1093/bib/bbx137>), which are based on miRNA-messenger RNA regulation alone, or by integrating heterogeneous data, respectively. In addition, this package provides several network analysis modules for viewing the constructed ceRNA-ceRNA network and analysis of the topological features.

Version: 2.0
Depends: R (≥ 3.1.0)
Imports: gtools , igraph, survival, parallel
Published: 2019-07-08
Author: Mengying Zhang,Yongsheng Li,Juan Xu*,Xia Li*
Maintainer: Mengying Zhang <zhangmengying at hrbmu.edu.cn>
License: GPL-3
NeedsCompilation: no
CRAN checks: CeRNASeek results

Downloads:

Reference manual: CeRNASeek.pdf
Package source: CeRNASeek_2.0.tar.gz
Windows binaries: r-devel: CeRNASeek_2.0.zip, r-release: CeRNASeek_2.0.zip, r-oldrel: CeRNASeek_2.0.zip
OS X binaries: r-release: CeRNASeek_2.0.tgz, r-oldrel: CeRNASeek_2.0.tgz
Old sources: CeRNASeek archive

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