GenoTriplo: Genotyping Triploids (or Diploids) from Luminescence Data

Genotyping of triploid individuals from luminescence data (marker probeset A and B). Works also for diploids. Two main functions: Run_Clustering() that regroups individuals with a same genotype based on proximity and Run_Genotyping() that assigns a genotype to each cluster. For Shiny interface use: launch_GenoShiny().

Version: 1.0.4
Depends: R (≥ 3.5.0), shinyBS
Imports: cowplot, doParallel, dplyr, DT, foreach, ggplot2, htmltools, parallel, processx, rlang, Rmixmod, shiny, shinythemes, tidyr
Published: 2024-02-28
DOI: 10.32614/CRAN.package.GenoTriplo
Author: Julien Roche [aut, cre], Florence Phocas [aut], Mathieu Besson [aut], Pierre Patrice [aut], Marc Vandeputte [aut], Fran├žois Allal [aut], Pierrick Haffray [aut]
Maintainer: Julien Roche <jjm.roche at gmail.com>
License: GPL-2 | GPL-3 [expanded from: GPL]
NeedsCompilation: no
CRAN checks: GenoTriplo results

Documentation:

Reference manual: GenoTriplo.pdf

Downloads:

Package source: GenoTriplo_1.0.4.tar.gz
Windows binaries: r-devel: GenoTriplo_1.0.4.zip, r-release: GenoTriplo_1.0.4.zip, r-oldrel: GenoTriplo_1.0.4.zip
macOS binaries: r-release (arm64): GenoTriplo_1.0.4.tgz, r-oldrel (arm64): GenoTriplo_1.0.4.tgz, r-release (x86_64): GenoTriplo_1.0.4.tgz, r-oldrel (x86_64): GenoTriplo_1.0.4.tgz
Old sources: GenoTriplo archive

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