PSSMCOOL: Features Extracted from Position Specific Scoring Matrix (PSSM)

Returns almost all features that has been extracted from Position Specific Scoring Matrix (PSSM) so far, which is a matrix of L rows (L is protein length) and 20 columns produced by 'PSI-BLAST' which is a program to produce PSSM Matrix from multiple sequence alignment of proteins see <https://www.ncbi.nlm.nih.gov/books/NBK2590/> for mor details. some of these features are described in Zahiri, J., et al.(2013) <doi:10.1016/j.ygeno.2013.05.006>, Saini, H., et al.(2016) <doi:10.17706/jsw.11.8.756-767>, Ding, S., et al.(2014) <doi:10.1016/j.biochi.2013.09.013>, Cheng, C.W., et al.(2008) <doi:10.1186/1471-2105-9-S12-S6>, Juan, E.Y., et al.(2009) <doi:10.1109/CISIS.2009.194>.

Version: 0.2.2
Depends: R (≥ 3.1.0)
Imports: utils, gtools, infotheo, phonTools, dtt
Suggests: testthat, spelling, waveslim, knitr, rmarkdown
Published: 2021-09-27
Author: Javad zahiri [aut], Alireza mohammadi [aut, cre], Saber mohammadi [aut]
Maintainer: Alireza mohammadi <alireza691111 at gmail.com>
BugReports: https://github.com/BioCool-Lab/PSSMCOOL/issues
License: GPL-3
URL: https://github.com/BioCool-Lab/PSSMCOOL
NeedsCompilation: no
Language: en-US
Materials: README
CRAN checks: PSSMCOOL results

Downloads:

Reference manual: PSSMCOOL.pdf
Vignettes: PSSMCOOL
Package source: PSSMCOOL_0.2.2.tar.gz
Windows binaries: r-devel: PSSMCOOL_0.2.1.zip, r-release: PSSMCOOL_0.2.1.zip, r-oldrel: PSSMCOOL_0.2.1.zip
macOS binaries: r-release (arm64): PSSMCOOL_0.2.1.tgz, r-release (x86_64): PSSMCOOL_0.2.1.tgz, r-oldrel: PSSMCOOL_0.2.1.tgz
Old sources: PSSMCOOL archive

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