prozor: Minimal Protein Set Explaining Peptide Spectrum Matches

Determine minimal protein set explaining peptide spectrum matches. Utility functions for creating fasta amino acid databases with decoys and contaminants. Peptide false discovery rate estimation for target decoy search results on psm, precursor, peptide and protein level.

Version: 0.2.11
Imports: AhoCorasickTrie, Matrix, doParallel, foreach, plyr, readr, seqinr, stringr, dplyr
Suggests: knitr, rmarkdown
Published: 2018-07-26
Author: Witold Wolski
Maintainer: Witold Wolski <wewolski at gmail.com>
BugReports: https://github.com/protviz/prozor/issues
License: GPL-3
URL: https://github.com/protviz/prozor
NeedsCompilation: no
Materials: README
CRAN checks: prozor results

Downloads:

Reference manual: prozor.pdf
Vignettes: Creating Target Decoy databases
Peptide Annotation and Protein Inference
Vignette Title
Package source: prozor_0.2.11.tar.gz
Windows binaries: r-devel: prozor_0.2.11.zip, r-release: prozor_0.2.11.zip, r-oldrel: prozor_0.2.11.zip
macOS binaries: r-release (arm64): prozor_0.2.11.tgz, r-release (x86_64): prozor_0.2.11.tgz, r-oldrel: prozor_0.2.11.tgz
Old sources: prozor archive

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