tmod: Feature Set Enrichment Analysis for Metabolomics and Transcriptomics

Methods and feature set definitions for feature or gene set enrichment analysis in transcriptional and metabolic profiling data. Package includes tests for enrichment based on ranked lists of features, functions for visualisation and multivariate functional analysis.

Version: 0.46.2
Depends: R (≥ 2.10)
Imports: beeswarm, tagcloud, XML, methods, plotwidgets, RColorBrewer, gplots, colorDF
Suggests: testthat, knitr, rmarkdown, pca3d, R.rsp, dplyr
Published: 2020-10-02
Author: January Weiner
Maintainer: January Weiner <january.weiner at gmail.com>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2.0)]
URL: http://bioinfo.mpiib-berlin.mpg.de/tmod/
NeedsCompilation: no
Materials: README NEWS ChangeLog
CRAN checks: tmod results

Documentation:

Reference manual: tmod.pdf
Vignettes: The tmod Visualization Gallery

Downloads:

Package source: tmod_0.46.2.tar.gz
Windows binaries: r-devel: tmod_0.46.2.zip, r-release: tmod_0.46.2.zip, r-oldrel: tmod_0.46.2.zip
macOS binaries: r-release (arm64): tmod_0.46.2.tgz, r-release (x86_64): tmod_0.46.2.tgz, r-oldrel: tmod_0.46.2.tgz
Old sources: tmod archive

Reverse dependencies:

Reverse imports: disco

Linking:

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