MDplot: Visualising Molecular Dynamics Analyses

Provides automatization for plot generation succeeding common molecular dynamics analyses. This includes straightforward plots, such as RMSD (Root-Mean-Square-Deviation) and RMSF (Root-Mean-Square-Fluctuation) but also more sophisticated ones such as dihedral angle maps, hydrogen bonds, cluster bar plots and DSSP (Definition of Secondary Structure of Proteins) analysis. Currently able to load GROMOS, GROMACS and AMBER formats, respectively.

Version: 1.0.0
Depends: R (≥ 3.0.0), methods, MASS, RColorBrewer, gplots, gtools
Published: 2017-02-23
Author: Christian Margreitter [aut, cre]
Maintainer: Christian Margreitter <christian.margreitter at gmail.com>
License: GPL-3
URL: https://github.com/MDplot/MDplot
NeedsCompilation: no
Citation: MDplot citation info
Materials: NEWS
CRAN checks: MDplot results

Downloads:

Reference manual: MDplot.pdf
Package source: MDplot_1.0.0.tar.gz
Windows binaries: r-devel: MDplot_1.0.0.zip, r-release: MDplot_1.0.0.zip, r-oldrel: MDplot_1.0.0.zip
OS X Mavericks binaries: r-release: MDplot_1.0.0.tgz, r-oldrel: MDplot_1.0.0.tgz
Old sources: MDplot archive

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