Last updated on 2024-05-03 22:53:41 CEST.
Package | ERROR | NOTE | OK |
---|---|---|---|
bigassertr | 11 | ||
bigparallelr | 11 | ||
bigreadr | 1 | 10 | |
bigsnpr | 10 | 1 | |
bigsparser | 11 | ||
bigstatsr | 11 | ||
bigutilsr | 11 | ||
inplace | 11 | ||
mmapcharr | 11 | ||
pcadapt | 3 | 8 | |
primefactr | 11 | ||
rmio | 11 | ||
runonce | 11 |
Current CRAN status: OK: 11
Current CRAN status: OK: 11
Current CRAN status: ERROR: 1, OK: 10
Version: 0.2.5
Check: tests
Result: ERROR
Running 'spelling.R' [0s]
Running 'testthat.R' [6s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(bigreadr)
>
> test_check("bigreadr")
[ FAIL 1 | WARN 1 | SKIP 0 | PASS 315 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-read.R:36:3'): 'fread2' can use different types of input ───────
Error in `download.file(file, tmpFile, method = method, mode = "wb", quiet = !showProgress)`: cannot open URL 'https://raw.githubusercontent.com/privefl/bigsnpr/master/inst/extdata/example.fam'
Backtrace:
▆
1. ├─testthat::expect_equal(fread2(url), data.table::fread(url, data.table = FALSE)) at test-read.R:36:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─bigreadr::fread2(url)
5. └─data.table::fread(input, ..., data.table = data.table, nThread = nThread)
6. └─utils::download.file(...)
[ FAIL 1 | WARN 1 | SKIP 0 | PASS 315 ]
Error: Test failures
Execution halted
Flavor: r-release-windows-x86_64
Current CRAN status: NOTE: 10, OK: 1
Version: 1.12.2
Check: HTML version of manual
Result: NOTE
Found the following HTML validation problems:
snp_ldsc.html:134:1 (snp_ldsc.Rd:74): Warning: trimming empty <dt>
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-windows-x86_64
Version: 1.12.2
Check: installed package size
Result: NOTE
installed size is 8.9Mb
sub-directories of 1Mb or more:
libs 7.4Mb
Flavors: r-release-macos-arm64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 1.12.2
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘gaston’
Flavor: r-oldrel-macos-x86_64
Current CRAN status: NOTE: 11
Version: 0.6.1
Check: C++ specification
Result: NOTE
Specified C++11: please drop specification unless essential
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.6.1
Check: dependencies in R code
Result: NOTE
Namespace in Imports field not imported from: ‘rmio’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Current CRAN status: NOTE: 11
Version: 1.5.12
Check: C++ specification
Result: NOTE
Specified C++11: please drop specification unless essential
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 1.5.12
Check: Rd files
Result: NOTE
checkRd: (-1) FBM-class.Rd:97: Lost braces; missing escapes or markup?
97 | to be used by package {bigmemory}.
| ^
checkRd: (-1) FBM-class.Rd:99: Lost braces; missing escapes or markup?
99 | to be used by package {bigmemory}.
| ^
checkRd: (-1) big_read.Rd:57: Lost braces; missing escapes or markup?
57 | Read a file as a Filebacked Big Matrix by using package {bigreadr}.
| ^
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-windows-x86_64
Version: 1.5.12
Check: dependencies in R code
Result: NOTE
Namespace in Imports field not imported from: ‘rmio’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 1.5.12
Check: installed package size
Result: NOTE
installed size is 11.6Mb
sub-directories of 1Mb or more:
extdata 2.3Mb
libs 8.6Mb
Flavors: r-release-macos-arm64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Current CRAN status: OK: 11
Current CRAN status: NOTE: 11
Version: 0.1.2
Check: LazyData
Result: NOTE
'LazyData' is specified without a 'data' directory
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: NOTE: 11
Version: 0.3.0
Check: C++ specification
Result: NOTE
Specified C++11: please drop specification unless essential
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.3.0
Check: LazyData
Result: NOTE
'LazyData' is specified without a 'data' directory
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: NOTE: 3, OK: 8
Version: 4.3.5
Check: installed package size
Result: NOTE
installed size is 5.9Mb
sub-directories of 1Mb or more:
extdata 2.7Mb
libs 2.5Mb
Flavors: r-release-macos-arm64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Current CRAN status: NOTE: 11
Version: 0.1.1
Check: LazyData
Result: NOTE
'LazyData' is specified without a 'data' directory
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: OK: 11
Current CRAN status: OK: 11